Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   QA712_RS01860 Genome accession   NZ_CP121539
Coordinates   257866..258921 (+) Length   351 a.a.
NCBI ID   WP_372757431.1    Uniprot ID   -
Organism   Lactococcus lactis strain MA5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 252866..263921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA712_RS01845 (QA712_01825) - 254107..255573 (+) 1467 WP_372757425.1 Y-family DNA polymerase -
  QA712_RS01850 (QA712_01830) - 255570..255962 (+) 393 WP_372757427.1 hypothetical protein -
  QA712_RS01855 (QA712_01835) recA 255977..257002 (+) 1026 WP_372757429.1 recombinase RecA -
  QA712_RS01860 (QA712_01840) xerS 257866..258921 (+) 1056 WP_372757431.1 tyrosine recombinase XerS Machinery gene
  QA712_RS01865 (QA712_01845) - 259005..259292 (+) 288 WP_033899768.1 hypothetical protein -
  QA712_RS01870 (QA712_01850) xerS 259775..260845 (+) 1071 WP_372757433.1 tyrosine recombinase XerS Machinery gene
  QA712_RS01875 (QA712_01855) trmFO 260892..262235 (-) 1344 WP_311803373.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 40593.33 Da        Isoelectric Point: 9.5768

>NTDB_id=737269 QA712_RS01860 WP_372757431.1 257866..258921(+) (xerS) [Lactococcus lactis strain MA5]
MSENHGYRYNVNKLMLEFPYYVNEFIQSKDTVPLSIASIYSYCLEFRKYLKWMNENNITNHANIKEITLKEMENVTKREL
EAFVLHERLRLESKCGSNTHTSALNRTIAAIKSLYNYLCEQTEDIHGNTYMTRNVSRLIHIRKKSETLHYRAAQLEGKLF
LGDETKAFLEFVEHDYEQSVSNRAKSSFKKNKVRDLAILSLFLSSGLRCAELVGINLNDLNLETGKVRVMRKEGKKDVVP
IAHFSHKYITDYYEARSSLNTDVEALFITDYNQKIRKISNASINKLVAKYSEAYKVRVTPHTLRHTFATRLYNVSHSQVL
VSNQLGHSSTKPTELYTHIVSAEAKDALSKL

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=737269 QA712_RS01860 WP_372757431.1 257866..258921(+) (xerS) [Lactococcus lactis strain MA5]
ATGTCAGAAAACCATGGTTATCGTTATAATGTAAATAAACTTATGCTTGAGTTTCCCTACTATGTCAATGAGTTTATCCA
GTCTAAGGACACAGTACCACTAAGTATTGCCTCCATTTACTCTTACTGCTTAGAATTTAGAAAATACTTGAAATGGATGA
ATGAAAATAACATAACGAACCATGCTAACATCAAAGAAATTACTTTGAAAGAAATGGAAAACGTAACGAAACGTGAACTA
GAAGCTTTTGTACTTCACGAACGACTCCGTTTAGAATCAAAATGTGGTTCTAATACACATACATCAGCACTAAATCGAAC
CATTGCAGCGATTAAGAGCCTATATAACTACTTGTGTGAACAAACTGAAGATATTCACGGAAATACATACATGACTAGAA
ATGTTAGCCGCTTAATTCATATCCGAAAAAAAAGTGAAACCTTGCATTACCGTGCGGCTCAACTGGAAGGTAAACTATTC
CTAGGAGATGAAACCAAAGCCTTTTTAGAATTTGTTGAACATGACTATGAACAGTCTGTCAGTAACCGTGCAAAATCAAG
TTTCAAGAAAAATAAAGTCAGGGATTTAGCTATATTAAGTCTTTTTTTATCATCTGGATTACGTTGTGCTGAACTTGTAG
GAATCAATCTTAACGATTTAAACCTTGAAACTGGAAAAGTAAGAGTGATGCGAAAAGAAGGCAAGAAGGATGTAGTGCCT
ATTGCTCATTTTTCGCATAAATATATAACAGATTATTATGAGGCAAGAAGTAGCTTAAATACTGATGTAGAAGCTTTATT
TATCACGGACTATAATCAAAAAATTAGAAAAATTTCTAACGCATCGATAAATAAGCTAGTCGCAAAGTATTCAGAAGCCT
ATAAAGTTAGAGTAACCCCTCATACTCTAAGGCATACATTCGCAACAAGACTCTATAATGTCAGTCACTCTCAAGTCCTT
GTCAGCAACCAATTAGGACATTCTTCAACCAAACCAACTGAGTTATATACCCATATTGTCAGCGCTGAAGCTAAAGATGC
GTTAAGCAAGTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(186-339)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

46

99.715

0.459