Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   OC371_RS01640 Genome accession   NZ_CP106988
Coordinates   350010..350492 (+) Length   160 a.a.
NCBI ID   WP_001046417.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain NY13623     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 345010..355492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OC371_RS01630 (OC371_01630) pilX 345313..346131 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OC371_RS01635 (OC371_01635) pilY1 346143..349997 (+) 3855 WP_000768966.1 PilC/PilY family type IV pilus protein Machinery gene
  OC371_RS01640 (OC371_01640) pilY2 350010..350492 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  OC371_RS01645 (OC371_01645) pilE 350489..350914 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene
  OC371_RS01650 (OC371_01650) rpsP 351061..351312 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  OC371_RS01655 (OC371_01655) rimM 351332..351880 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  OC371_RS01660 (OC371_01660) trmD 351926..352666 (+) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  OC371_RS01665 (OC371_01665) rplS 352874..353242 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  OC371_RS01670 (OC371_01670) - 353294..354235 (-) 942 WP_085946156.1 triacylglycerol lipase -
  OC371_RS01675 (OC371_01675) - 354350..355384 (-) 1035 WP_001189451.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17516.77 Da        Isoelectric Point: 8.4817

>NTDB_id=736949 OC371_RS01640 WP_001046417.1 350010..350492(+) (pilY2) [Acinetobacter baumannii strain NY13623]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=736949 OC371_RS01640 WP_001046417.1 350010..350492(+) (pilY2) [Acinetobacter baumannii strain NY13623]
ATGAATAAGTACTCTATTCTACGGTTCAATCAAGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTGGAACAGCATAAATCAAGAAATTTTACTTATAGGGGGTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGACAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGTCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

98.125

100

0.981
  comE Acinetobacter baylyi ADP1

41.279

100

0.444