Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NDL74_RS11090 Genome accession   NZ_CP106921
Coordinates   2106311..2106814 (-) Length   167 a.a.
NCBI ID   WP_260245409.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10272     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2101311..2111814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDL74_RS11070 (NDL74_11070) msrAB 2101515..2103083 (-) 1569 WP_003694393.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  NDL74_RS11075 (NDL74_11075) pilA 2103229..2104482 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  NDL74_RS11080 (NDL74_11080) - 2104935..2105093 (+) 159 WP_154236104.1 hypothetical protein -
  NDL74_RS11085 (NDL74_11085) - 2105067..2105771 (-) 705 WP_265509517.1 opacity family porin -
  NDL74_RS11090 (NDL74_11090) pilE 2106311..2106814 (-) 504 WP_260245409.1 pilin Machinery gene
  NDL74_RS11095 (NDL74_11095) - 2107181..2107324 (-) 144 WP_012503975.1 hypothetical protein -
  NDL74_RS11100 (NDL74_11100) - 2107429..2107509 (-) 81 Protein_2146 prepilin-type cleavage/methylation domain-containing protein -
  NDL74_RS11105 (NDL74_11105) pilE 2107627..2108058 (-) 432 WP_260245408.1 pilin Machinery gene
  NDL74_RS11110 (NDL74_11110) lpxC 2108164..2109087 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  NDL74_RS11935 - 2109589..2110317 (-) 729 WP_409261977.1 pilin -
  NDL74_RS11130 (NDL74_11130) - 2110343..2110558 (-) 216 Protein_2150 pilin -
  NDL74_RS11135 (NDL74_11135) - 2110931..2111062 (-) 132 WP_010356054.1 hypothetical protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18024.43 Da        Isoelectric Point: 7.1336

>NTDB_id=736667 NDL74_RS11090 WP_260245409.1 2106311..2106814(-) (pilE) [Neisseria gonorrhoeae strain 10272]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYPNHGEWPKDNGSAGVASASEIK
GKYVKEVKVENGVVTATMNSSNVNKEIKDKRLSLWAKRQDGSVKWFCGQPVQRADNADNDAVTAATAGKDTTNIDTKHLP
STCRDLP

Nucleotide


Download         Length: 504 bp        

>NTDB_id=736667 NDL74_RS11090 WP_260245409.1 2106311..2106814(-) (pilE) [Neisseria gonorrhoeae strain 10272]
ATGAATACCCTTCAAAAAGGCTTTACCCTTATCGAGCTGATGATTGTGATCGCCATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCCGCCTACCAAGACTACACCGCCCGCGCGCAAGTTTCCGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCG
TTACCGAGTATTACCCGAATCACGGCGAATGGCCCAAAGACAACGGCTCTGCCGGCGTGGCATCCGCTTCAGAAATCAAA
GGCAAATATGTTAAGGAAGTTAAAGTCGAAAACGGCGTCGTTACCGCCACAATGAATTCAAGCAACGTAAACAAAGAAAT
CAAAGACAAAAGACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTCAGCGCG
CCGACAACGCCGACAACGACGCCGTCACCGCCGCCACCGCCGGCAAAGACACCACCAACATCGACACCAAGCACCTGCCG
TCAACCTGCCGCGACCTGCCGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-164)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

81.325

99.401

0.808
  pilE Neisseria gonorrhoeae MS11

79.518

99.401

0.79
  comP Acinetobacter baylyi ADP1

37.143

100

0.389
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

33.163

100

0.389