Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NDL74_RS11105 Genome accession   NZ_CP106921
Coordinates   2107627..2108058 (-) Length   143 a.a.
NCBI ID   WP_260245408.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10272     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2102627..2113058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDL74_RS11075 (NDL74_11075) pilA 2103229..2104482 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  NDL74_RS11080 (NDL74_11080) - 2104935..2105093 (+) 159 WP_154236104.1 hypothetical protein -
  NDL74_RS11085 (NDL74_11085) - 2105067..2105771 (-) 705 WP_265509517.1 opacity family porin -
  NDL74_RS11090 (NDL74_11090) pilE 2106311..2106814 (-) 504 WP_260245409.1 pilin Machinery gene
  NDL74_RS11095 (NDL74_11095) - 2107181..2107324 (-) 144 WP_012503975.1 hypothetical protein -
  NDL74_RS11100 (NDL74_11100) - 2107429..2107509 (-) 81 Protein_2146 prepilin-type cleavage/methylation domain-containing protein -
  NDL74_RS11105 (NDL74_11105) pilE 2107627..2108058 (-) 432 WP_260245408.1 pilin Machinery gene
  NDL74_RS11110 (NDL74_11110) lpxC 2108164..2109087 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  NDL74_RS11935 - 2109589..2110317 (-) 729 WP_409261977.1 pilin -
  NDL74_RS11130 (NDL74_11130) - 2110343..2110558 (-) 216 Protein_2150 pilin -
  NDL74_RS11135 (NDL74_11135) - 2110931..2111062 (-) 132 WP_010356054.1 hypothetical protein -
  NDL74_RS11140 (NDL74_11140) - 2111144..2111832 (-) 689 Protein_2152 SprT family zinc-dependent metalloprotease -
  NDL74_RS11145 (NDL74_11145) - 2111829..2112572 (-) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 15577.41 Da        Isoelectric Point: 8.4754

>NTDB_id=736668 NDL74_RS11105 WP_260245408.1 2107627..2108058(-) (pilE) [Neisseria gonorrhoeae strain 10272]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYPNHGKWPEDNDKAGVANPTEIKGKYVKQVEVKNGVVTATMNSSNVNKEIK
GKKLSLWARRQDGSVKWFCGQPVTRADDAVKAGTDAVTADTTGKDKIETKHLPSTCRDPFSAS

Nucleotide


Download         Length: 432 bp        

>NTDB_id=736668 NDL74_RS11105 WP_260245408.1 2107627..2108058(-) (pilE) [Neisseria gonorrhoeae strain 10272]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCCGAATCACGGCAAATGGCCGGAAGACAACGACAAGGCCGGCGTGGCAAACCCCACCGAAATCAAAGGCA
AATATGTTAAGCAAGTTGAAGTCAAAAACGGCGTCGTCACCGCCACAATGAATTCAAGCAACGTAAACAAAGAAATCAAA
GGCAAAAAACTCTCCCTGTGGGCCAGGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCGCCGA
CGACGCCGTCAAAGCCGGCACCGACGCCGTCACCGCCGACACCACCGGCAAAGACAAAATCGAAACCAAGCACCTGCCGT
CAACCTGCCGCGACCCGTTCTCTGCTAGCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

70.629

100

0.706
  pilE Neisseria gonorrhoeae strain FA1090

63.889

100

0.643