Detailed information NTG0736413

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: M9799_RS10860
• Genome accession: NZ_CP106881
• Coordinates: 2412095..2413537 (-)
• Length: 480 a.a.
• NCBI ID: WP_231041694.1
• Uniprot ID: -
• Organism: Comamonas endophytica strain 5MLIR
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2407095..2418537

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M9799_RS10850 (M9799_10850)	-	2408182..2411112 (-)	2931	WP_231041692.1	ribonucleoside-diphosphate reductase subunit alpha	-
M9799_RS10855 (M9799_10855)	ampD	2411512..2412120 (-)	609	WP_231041693.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
M9799_RS10860 (M9799_10860)	pilR	2412095..2413537 (-)	1443	WP_231041694.1	sigma-54 dependent transcriptional regulator	Regulator
M9799_RS10865 (M9799_10865)	-	2413547..2415283 (-)	1737	WP_231041695.1	HAMP domain-containing sensor histidine kinase	-
M9799_RS10870 (M9799_10870)	-	2415304..2415546 (-)	243	WP_231041696.1	PP0621 family protein	-
M9799_RS10875 (M9799_10875)	ccsA	2415543..2416328 (-)	786	WP_231041697.1	cytochrome c biogenesis protein CcsA	-
M9799_RS10880 (M9799_10880)	ffh	2416579..2417973 (+)	1395	WP_231041698.1	signal recognition particle protein	-

Sequence

Protein

• Length: 480 a.a.
• Molecular weight: 52020.28 Da
• Isoelectric Point: 5.6688

>NTDB_id=736413 M9799_RS10860 WP_231041694.1 2412095..2413537(-) (pilR) [Comamonas endophytica strain 5MLIR]
MPDIAASILVIDDEPDLRTLYELTLLREGYRVETADCVHEARAQLQAQRFDAVLTDMRLPDGLGLELLHELRAQQRPERC
VVITAHSSAENAVEALRAGAFDYLSKPVDLKQFRAVVASAVRRPADSGDAALRGARGAGPRDIELLVADPASALAQLVGE
SPAMRAVKQNILKVAKSMAPVLVQGESGTGKELVARALHACSHRADGPLVAVNCGAIPDNLLEAEFFGARKGSYTGATQD
RGGYFQAARGGTLFLDEIGDLPLAMQAKLLRAIQERRVRPLGSTQEEAVDVRIVSATHRDLAEEVAAGRFRQDLYYRLNV
IEIRLPPLRERREDLPALCEVLLARIAAESGCAVPPLTAQVLEQLARLPLTGNVRELENQLHRALALGEDQQLSLDVAAA
DAAAADPFAPAPVATPGPLPHDLQAWLDQQERDILVRALHEVGFNRTAAAARLGISLRQIRYRIARLNIAAPHDSDSSEH

Nucleotide

• Length: 1443 bp

>NTDB_id=736413 M9799_RS10860 WP_231041694.1 2412095..2413537(-) (pilR) [Comamonas endophytica strain 5MLIR]
ATGCCTGACATCGCCGCCTCCATCCTGGTCATCGACGACGAGCCCGACCTGCGCACGCTCTACGAGCTGACGCTGCTGCG
CGAGGGCTACCGCGTGGAAACCGCCGACTGCGTGCACGAGGCGCGTGCGCAGCTGCAGGCGCAGCGCTTCGACGCCGTGC
TCACCGACATGCGCCTGCCCGACGGCCTGGGCCTGGAGCTGCTGCACGAGCTGCGCGCCCAGCAGCGGCCCGAGCGCTGC
GTGGTCATCACCGCGCACAGCTCGGCCGAGAACGCCGTCGAGGCGCTGCGCGCGGGCGCGTTCGACTACCTGAGCAAGCC
CGTGGACCTCAAGCAGTTCCGCGCCGTCGTGGCCTCGGCCGTGCGCCGGCCCGCCGACTCCGGCGATGCCGCGCTGCGCG
GCGCGCGCGGCGCCGGCCCGCGCGACATCGAGCTGCTCGTGGCCGATCCCGCGAGCGCACTGGCGCAGCTGGTGGGCGAA
TCGCCGGCCATGCGCGCGGTCAAGCAGAACATTCTCAAGGTCGCAAAGAGCATGGCCCCGGTGCTGGTGCAGGGCGAATC
GGGCACCGGCAAGGAACTGGTCGCGCGCGCGCTGCATGCCTGCAGCCACCGCGCCGACGGCCCGCTGGTGGCGGTGAACT
GCGGCGCGATTCCCGACAACCTGCTAGAAGCCGAGTTCTTCGGCGCGCGCAAGGGCTCCTACACCGGCGCGACCCAGGAC
CGCGGCGGCTACTTCCAGGCCGCGCGCGGCGGCACGCTGTTCCTCGACGAGATCGGCGACCTGCCGCTGGCCATGCAGGC
CAAGCTGCTGCGCGCGATCCAGGAGCGGCGCGTGCGCCCGCTGGGCTCGACCCAGGAGGAGGCGGTTGACGTGCGCATCG
TCAGCGCCACGCACCGCGACCTGGCCGAGGAGGTGGCAGCCGGGCGCTTCCGCCAGGACCTGTACTACCGGCTCAATGTC
ATAGAGATCCGGCTGCCGCCGCTGCGCGAGCGCCGCGAGGACCTGCCGGCGCTGTGCGAGGTGCTGCTGGCGCGCATCGC
GGCCGAAAGCGGCTGCGCCGTGCCGCCGCTCACCGCGCAGGTGCTCGAACAGCTGGCGCGGCTGCCGCTCACCGGCAATG
TGCGCGAGCTGGAGAACCAGCTGCACCGCGCGTTGGCGCTGGGCGAGGACCAGCAGCTGTCGCTCGATGTTGCGGCGGCC
GACGCCGCGGCGGCCGACCCGTTTGCACCCGCGCCGGTGGCCACGCCCGGCCCCCTGCCCCATGACCTGCAGGCCTGGCT
GGACCAGCAGGAGCGCGACATCCTGGTGCGCGCGCTGCACGAGGTGGGCTTCAACCGCACCGCGGCTGCCGCCCGGCTGG
GCATCAGCCTGCGCCAGATCCGCTACCGCATCGCGCGCCTGAACATCGCCGCACCCCATGACAGCGACAGCAGCGAGCAC
TGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (157-323)

• Bacterial regulatory protein, Fis family (HTH_8) (427-466)

• Response regulator receiver domain (Response_reg) (8-117)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	51.404	96.458	0.496
pilR	Acinetobacter baumannii strain A118	41.387	99.167	0.41