Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCF84_RS17105 Genome accession   NZ_CP106874
Coordinates   3903920..3904633 (-) Length   237 a.a.
NCBI ID   WP_144344859.1    Uniprot ID   -
Organism   Shewanella xiamenensis strain FH-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3898920..3909633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCF84_RS17095 (OCF84_17100) - 3899994..3902825 (-) 2832 WP_188869342.1 M16 family metallopeptidase -
  OCF84_RS17100 (OCF84_17105) - 3903355..3903699 (-) 345 WP_229777625.1 hypothetical protein -
  OCF84_RS17105 (OCF84_17110) ssb 3903920..3904633 (-) 714 WP_144344859.1 single-stranded DNA-binding protein Machinery gene
  OCF84_RS17110 (OCF84_17115) - 3904742..3906109 (-) 1368 WP_037431506.1 MFS transporter -
  OCF84_RS17115 (OCF84_17120) uvrA 3906518..3909370 (+) 2853 WP_188869340.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 25665.15 Da        Isoelectric Point: 6.2359

>NTDB_id=736304 OCF84_RS17105 WP_144344859.1 3903920..3904633(-) (ssb) [Shewanella xiamenensis strain FH-1]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVLFGKLAEITGEYLRKGSQVYLE
GKLQTRKWKDQSGQDRYSTEVVIDQSGSMQMLGGRNQGQGQGAPMGGMPQNGGYQSAPQQAAPAQNQYAPAPQAAPAYQA
PAPQPQSGYNQQPAQQSYGQQQSHAQPHAQPQQGGYAPKPAAPAYQAPAAPAQRPAPQPQQNFTPDLDDGWDDDIPF

Nucleotide


Download         Length: 714 bp        

>NTDB_id=736304 OCF84_RS17105 WP_144344859.1 3903920..3904633(-) (ssb) [Shewanella xiamenensis strain FH-1]
ATGGCCAGTCGTGGTGTTAACAAGGTAATTTTGGTTGGCAATTTGGGACAAGATCCAGAAGTGCGTTATATGCCAAACGG
TAACGCAGTCGCAAACATCACCGTTGCGACCAGCGAATCGTGGAAAGACCAACAAGGTCAACAGCAAGAACGTACTGAAT
GGCACCGTGTGGTTCTGTTTGGCAAGTTGGCTGAAATTACGGGTGAGTACCTGCGTAAAGGTTCACAGGTTTACCTCGAA
GGTAAATTGCAAACGCGTAAGTGGAAAGACCAAAGCGGTCAAGATCGTTACAGTACTGAAGTGGTTATCGACCAAAGCGG
TAGCATGCAAATGTTAGGCGGCCGTAACCAAGGTCAAGGCCAAGGTGCCCCAATGGGTGGTATGCCACAAAACGGCGGTT
ACCAATCAGCCCCACAACAAGCTGCTCCTGCGCAAAATCAATACGCGCCAGCACCGCAAGCGGCTCCGGCTTACCAAGCA
CCAGCGCCACAACCTCAATCTGGCTACAATCAGCAGCCAGCTCAGCAAAGCTATGGCCAGCAACAATCCCATGCGCAGCC
ACACGCTCAGCCACAACAAGGCGGTTATGCGCCTAAGCCTGCAGCTCCTGCGTATCAAGCGCCAGCGGCTCCTGCACAGC
GCCCTGCACCACAGCCACAGCAAAACTTTACTCCAGATTTGGATGACGGTTGGGACGACGATATCCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

64.773

74.262

0.481
  ssb Glaesserella parasuis strain SC1401

43.644

99.578

0.435