Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | DO80_RS04100 | Genome accession | NZ_AP019730 |
| Coordinates | 802330..802593 (-) | Length | 87 a.a. |
| NCBI ID | WP_096468242.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain TN2wt | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 797330..807593
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DO80_RS04080 (DO80_07860) | - | 798267..799373 (-) | 1107 | WP_108303929.1 | VirB8/TrbF family protein | - |
| DO80_RS08195 | - | 799366..799500 (-) | 135 | WP_033582542.1 | hypothetical protein | - |
| DO80_RS08410 (DO80_07870) | - | 799497..800636 (-) | 1140 | WP_373454281.1 | cell division protein FtsK | - |
| DO80_RS08415 (DO80_07880) | comB4 | 800691..801242 (-) | 552 | WP_373454282.1 | hypothetical protein | Machinery gene |
| DO80_RS08420 | - | 801164..801451 (-) | 288 | WP_373367128.1 | hypothetical protein | - |
| DO80_RS08425 (DO80_07890) | - | 801610..802083 (-) | 474 | WP_373367129.1 | hypothetical protein | - |
| DO80_RS04095 (DO80_07900) | - | 802083..802319 (-) | 237 | WP_001186276.1 | hypothetical protein | - |
| DO80_RS04100 (DO80_07910) | comB3 | 802330..802593 (-) | 264 | WP_096468242.1 | competence protein ComB | Machinery gene |
| DO80_RS04105 (DO80_07920) | comB2 | 802604..802888 (-) | 285 | WP_000736106.1 | TrbC/VirB2 family protein | Machinery gene |
| DO80_RS04110 (DO80_07930) | - | 802885..803364 (-) | 480 | WP_172417642.1 | hypothetical protein | - |
| DO80_RS04115 (DO80_07940) | - | 803468..804256 (-) | 789 | WP_108303930.1 | integrase | - |
| DO80_RS04120 (DO80_07950) | hopE | 804421..805242 (+) | 822 | WP_000395364.1 | Hop family outer membrane protein HopE | - |
| DO80_RS04125 (DO80_07960) | rsmH | 805421..806347 (+) | 927 | WP_108303931.1 | 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH | - |
| DO80_RS04130 (DO80_07970) | - | 806367..806711 (+) | 345 | WP_108303932.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10052.91 Da Isoelectric Point: 5.7206
>NTDB_id=73629 DO80_RS04100 WP_096468242.1 802330..802593(-) (comB3) [Helicobacter pylori strain TN2wt]
MQLFGISVSNLKEISSKEKFLWLNAKSFLIAGFVPFVMIPWLDFLNSLMLYVCFLLVFSIAEFFDEDISDILISHSKIKT
KTNSFYA
MQLFGISVSNLKEISSKEKFLWLNAKSFLIAGFVPFVMIPWLDFLNSLMLYVCFLLVFSIAEFFDEDISDILISHSKIKT
KTNSFYA
Nucleotide
Download Length: 264 bp
>NTDB_id=73629 DO80_RS04100 WP_096468242.1 802330..802593(-) (comB3) [Helicobacter pylori strain TN2wt]
ATGCAATTATTCGGCATTTCAGTTTCTAATCTCAAAGAAATCAGTTCTAAAGAAAAGTTTCTTTGGCTCAATGCTAAAAG
CTTTTTAATCGCAGGGTTTGTGCCTTTTGTAATGATACCTTGGCTAGATTTTTTAAATTCTTTAATGCTGTATGTGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGCGACATTTTAATCTCCCATTCTAAGATTAAAACC
AAAACTAATTCATTTTATGCTTAA
ATGCAATTATTCGGCATTTCAGTTTCTAATCTCAAAGAAATCAGTTCTAAAGAAAAGTTTCTTTGGCTCAATGCTAAAAG
CTTTTTAATCGCAGGGTTTGTGCCTTTTGTAATGATACCTTGGCTAGATTTTTTAAATTCTTTAATGCTGTATGTGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGCGACATTTTAATCTCCCATTCTAAGATTAAAACC
AAAACTAATTCATTTTATGCTTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
58.621 |
100 |
0.586 |