Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   N9E61_RS14720 Genome accession   NZ_CP106872
Coordinates   2993825..2994469 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain STJ-6     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2988825..2999469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N9E61_RS14685 (N9E61_14685) - 2990010..2990441 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  N9E61_RS14690 (N9E61_14690) - 2990441..2990782 (+) 342 WP_032876807.1 Na(+)/H(+) antiporter subunit C -
  N9E61_RS14695 (N9E61_14695) - 2990775..2992256 (+) 1482 WP_032876804.1 Na+/H+ antiporter subunit D -
  N9E61_RS14700 (N9E61_14700) - 2992262..2992738 (+) 477 WP_007613428.1 Na+/H+ antiporter subunit E -
  N9E61_RS14705 (N9E61_14705) - 2992738..2993022 (+) 285 WP_017419420.1 Na(+)/H(+) antiporter subunit F1 -
  N9E61_RS14710 (N9E61_14710) mnhG 2993006..2993380 (+) 375 WP_007613429.1 monovalent cation/H(+) antiporter subunit G -
  N9E61_RS14715 (N9E61_14715) - 2993420..2993803 (-) 384 WP_007613430.1 hotdog fold thioesterase -
  N9E61_RS14720 (N9E61_14720) comA 2993825..2994469 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  N9E61_RS14725 (N9E61_14725) comP 2994550..2996850 (-) 2301 WP_032876801.1 histidine kinase Regulator
  N9E61_RS14730 (N9E61_14730) comX 2996864..2997037 (-) 174 WP_012118314.1 competence pheromone ComX -
  N9E61_RS14735 (N9E61_14735) - 2997006..2997866 (-) 861 WP_142925231.1 polyprenyl synthetase family protein -
  N9E61_RS14740 (N9E61_14740) degQ 2998074..2998214 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  N9E61_RS14745 (N9E61_14745) - 2998680..2999021 (+) 342 WP_032876795.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=736262 N9E61_RS14720 WP_003152052.1 2993825..2994469(-) (comA) [Bacillus velezensis strain STJ-6]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=736262 N9E61_RS14720 WP_003152052.1 2993825..2994469(-) (comA) [Bacillus velezensis strain STJ-6]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTTGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGTCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864