Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   P8R99_RS04890 Genome accession   NZ_CP121160
Coordinates   972446..974431 (-) Length   661 a.a.
NCBI ID   WP_000141867.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain S5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 967446..979431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R99_RS04870 - 967973..969358 (+) 1386 WP_000085849.1 PTS transporter subunit EIIC -
  P8R99_RS04875 - 969566..971170 (-) 1605 WP_001104591.1 ABC transporter permease -
  P8R99_RS04880 pptA 971174..971908 (-) 735 WP_000589158.1 ABC transporter ATP-binding protein Regulator
  P8R99_RS04885 - 971928..972233 (-) 306 WP_000711207.1 bacteriocin immunity protein -
  P8R99_RS04890 recP/tkt 972446..974431 (-) 1986 WP_000141867.1 transketolase Machinery gene
  P8R99_RS04895 - 974556..975986 (-) 1431 WP_001217278.1 helix-turn-helix domain-containing protein -
  P8R99_RS04900 - 975977..977314 (-) 1338 WP_000137247.1 FAD/NAD(P)-binding oxidoreductase -
  P8R99_RS04905 - 977402..978100 (-) 699 WP_000350768.1 MIP/aquaporin family protein -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 71223.78 Da        Isoelectric Point: 4.5948

>NTDB_id=736231 P8R99_RS04890 WP_000141867.1 972446..974431(-) (recP/tkt) [Streptococcus agalactiae strain S5]
MTFDTIDQLAVNTVRTLSIDAIQAANSGHPGLPMGAAPMAYVLWNKFLNVNPKTSRNWTNRDRFVLSAGHGSALLYSLLH
LAGYDLSIDDLKQFRQWGSKTPGHPEVNHTDGVEATTGPLGQGIANAVGMAMAEAHLAAKFNKPGFDLVDHYTYTLHGDG
CLMEGVSQEAASLAGHLKLGKLVLLYDSNDISLDGPTSQSFTEDVKGRFESYGWQHILVKDGNDLEAIAAAIEAAKAETD
KPTIIEVKTIIGFGAEKQGTSSVHGAPLGAEGITFAKKAYGWEYPDFTVPAEVADRFASDLQARGAKAEEAWNDLFAKYE
VEYPELATEYKEAFAGQAETVELKAHDLGSSVASRVSSQQAIQQLSTQLPNLWGGSADLSASNNTMVAAETDFQASNYAG
RNIWFGVREFAMAAAMNGIALHGGTRVYGGTFFVFSNYLLPAVRMAALQNLPTVYVMTHDSIAVGEDGPTHEPIEQLASV
RSMPNLNVIRPADGNETNAAWQRAVSETDRPTMLVLTRQNLPVLEGTSELAQEGVNKGAYILSEAKGELDGIIIATGSEV
KLALDTQDKLESEGIHVRVVSMPAQNIFDEQEASYQEQVLPSSVTKRLAIEAGSSFGWGKYVGLNGLTLTIDTWGASAPG
NRIFEEYGFTVENAVSLYKEL

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=736231 P8R99_RS04890 WP_000141867.1 972446..974431(-) (recP/tkt) [Streptococcus agalactiae strain S5]
ATGACATTTGACACCATTGATCAATTAGCGGTTAATACAGTCCGCACGCTTTCTATTGATGCTATCCAAGCAGCAAATTC
TGGGCACCCAGGTCTTCCTATGGGAGCTGCGCCTATGGCTTATGTGCTTTGGAATAAATTCTTAAATGTAAACCCAAAAA
CAAGTCGCAATTGGACAAACCGTGACCGTTTTGTGCTATCAGCTGGGCATGGTTCAGCTCTTCTTTATAGCCTACTTCAT
TTAGCTGGCTATGATTTATCAATTGATGATTTAAAACAATTCCGCCAATGGGGATCAAAAACACCTGGACATCCAGAAGT
TAACCATACTGATGGTGTAGAAGCAACAACTGGACCTTTAGGGCAAGGTATTGCTAATGCTGTTGGTATGGCAATGGCTG
AAGCTCATTTGGCTGCTAAATTTAATAAACCAGGCTTTGATTTAGTTGATCATTACACTTATACACTTCATGGTGATGGT
TGTTTGATGGAGGGTGTTAGCCAAGAAGCTGCCAGTCTTGCTGGACACTTAAAACTTGGTAAATTGGTCCTTCTTTATGA
TTCAAATGATATCTCACTTGATGGTCCAACATCTCAATCATTTACAGAAGATGTTAAAGGACGTTTTGAATCATATGGTT
GGCAACATATCTTAGTTAAAGATGGTAATGATTTAGAAGCGATTGCTGCAGCAATTGAAGCTGCTAAAGCTGAAACTGAT
AAACCAACCATTATTGAAGTTAAAACTATTATTGGATTTGGCGCAGAGAAACAGGGAACATCTTCAGTTCATGGAGCGCC
ACTTGGTGCAGAAGGTATTACTTTTGCCAAGAAGGCTTATGGATGGGAATATCCAGACTTTACTGTTCCTGCTGAAGTTG
CAGATCGATTTGCCTCAGATCTTCAAGCGCGTGGTGCGAAGGCAGAAGAGGCATGGAATGATCTTTTTGCTAAATATGAA
GTTGAGTATCCAGAATTAGCAACTGAATACAAAGAAGCTTTTGCTGGCCAAGCTGAGACAGTTGAATTGAAAGCTCATGA
CCTAGGTTCATCAGTGGCTAGTCGTGTTTCAAGCCAACAAGCTATTCAACAATTATCGACTCAATTACCGAACCTCTGGG
GAGGGTCAGCAGACCTCTCAGCTTCTAATAACACAATGGTAGCAGCAGAAACAGATTTCCAAGCAAGTAACTACGCTGGG
CGTAACATTTGGTTTGGTGTACGTGAATTTGCAATGGCTGCTGCAATGAATGGAATTGCGCTTCACGGTGGGACTCGTGT
TTATGGGGGTACGTTCTTTGTCTTCTCAAACTACTTGTTACCAGCAGTACGTATGGCTGCACTTCAAAATTTGCCAACTG
TCTATGTTATGACACATGATTCTATTGCTGTTGGAGAAGATGGGCCAACTCATGAGCCAATAGAACAATTAGCATCAGTA
CGCTCAATGCCTAATTTGAACGTTATCCGTCCCGCAGACGGTAATGAAACAAACGCTGCATGGCAACGAGCTGTATCAGA
GACAGATCGACCAACGATGCTTGTTTTAACACGTCAAAACTTACCAGTTCTTGAAGGAACATCAGAATTAGCCCAAGAAG
GGGTTAATAAAGGTGCTTATATTTTATCAGAAGCTAAAGGTGAACTTGATGGTATCATCATTGCAACAGGTTCAGAAGTT
AAATTAGCTTTAGATACTCAAGACAAACTTGAGTCAGAGGGCATCCATGTTCGCGTCGTATCTATGCCAGCACAAAACAT
TTTTGATGAACAAGAGGCTTCATATCAAGAGCAAGTGCTTCCATCATCTGTTACAAAACGTCTTGCTATTGAGGCAGGAT
CAAGCTTCGGTTGGGGTAAATATGTTGGTTTAAATGGGCTAACACTTACTATTGATACTTGGGGAGCATCAGCACCAGGT
AACAGAATTTTCGAAGAGTATGGCTTTACAGTTGAGAATGCTGTATCGCTATATAAAGAACTTTAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-522)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-337)

Transketolase, C-terminal domain (Transketolase_C)

(552-652)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

56.079

99.546

0.558