Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   P8R99_RS04880 Genome accession   NZ_CP121160
Coordinates   971174..971908 (-) Length   244 a.a.
NCBI ID   WP_000589158.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain S5     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 966174..976908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R99_RS04865 proB 967029..967832 (-) 804 WP_000820353.1 glutamate 5-kinase -
  P8R99_RS04870 - 967973..969358 (+) 1386 WP_000085849.1 PTS transporter subunit EIIC -
  P8R99_RS04875 - 969566..971170 (-) 1605 WP_001104591.1 ABC transporter permease -
  P8R99_RS04880 pptA 971174..971908 (-) 735 WP_000589158.1 ABC transporter ATP-binding protein Regulator
  P8R99_RS04885 - 971928..972233 (-) 306 WP_000711207.1 bacteriocin immunity protein -
  P8R99_RS04890 recP/tkt 972446..974431 (-) 1986 WP_000141867.1 transketolase Machinery gene
  P8R99_RS04895 - 974556..975986 (-) 1431 WP_001217278.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27546.69 Da        Isoelectric Point: 4.6741

>NTDB_id=736230 P8R99_RS04880 WP_000589158.1 971174..971908(-) (pptA) [Streptococcus agalactiae strain S5]
MIKFEHVSKVYGEKEALSDLTLSIKDGEIFGLIGHNGAGKTTTISILTSIIDATYGQVYIDDLLLTEHRDQIKKKIGYVP
DSPDIFLNLTAEEYWYFLAKIYDVAPEDIEARITKLVDIFELEEQRYNPIESFSHGMRQKVIVIGALLPNPDIWILDEPL
TGLDPQASFDLKEMMKEHAKNGKTVIFSTHVLAVAEQLCDRIGILKQGKLIFVGSLGELKMQYPDKDLETIYLELAGRQA
NREG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=736230 P8R99_RS04880 WP_000589158.1 971174..971908(-) (pptA) [Streptococcus agalactiae strain S5]
ATGATTAAGTTTGAACATGTTTCGAAAGTATACGGAGAAAAAGAAGCTCTCAGTGATTTAACCCTCTCTATTAAAGATGG
TGAGATTTTTGGATTAATCGGTCACAATGGAGCAGGAAAAACAACGACAATTAGTATTCTAACATCTATTATTGATGCAA
CTTATGGCCAAGTCTATATTGATGACCTACTTTTGACAGAACATCGTGACCAAATTAAGAAAAAAATAGGTTATGTACCG
GACTCGCCAGATATTTTCTTAAATTTAACCGCAGAGGAATACTGGTACTTTTTAGCTAAAATTTATGATGTTGCCCCAGA
AGATATTGAAGCACGTATCACAAAATTGGTAGACATATTTGAACTAGAGGAGCAACGCTATAATCCTATTGAAAGTTTTT
CACATGGTATGCGTCAAAAAGTCATTGTTATAGGTGCTCTTCTTCCAAATCCTGATATTTGGATTCTAGATGAGCCGTTA
ACTGGTTTAGACCCTCAAGCTTCTTTTGATTTGAAAGAAATGATGAAAGAACATGCTAAAAATGGAAAAACAGTTATTTT
TTCAACACATGTTTTAGCAGTAGCAGAACAGTTATGCGACAGAATAGGTATTTTGAAACAAGGGAAATTAATCTTTGTCG
GTAGCTTAGGTGAGTTAAAAATGCAATATCCAGATAAAGATTTGGAAACTATCTATTTGGAATTAGCAGGACGTCAAGCT
AATAGGGAGGGATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

38.655

97.541

0.377
  pptA Streptococcus salivarius strain HSISS4

38.235

97.541

0.373