Detailed information NTG0736193

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: OCJ37_RS17555
• Genome accession: NZ_CP106869
• Coordinates: 4110480..4111625 (+)
• Length: 381 a.a.
• NCBI ID: WP_263110976.1
• Uniprot ID: -
• Organism: Xanthomonas sp. AM6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4105480..4116625

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCJ37_RS17525 (OCJ37_17525)	-	4105690..4106877 (-)	1188	WP_263110970.1	cystathionine gamma-synthase	-
OCJ37_RS17530 (OCJ37_17530)	-	4106960..4108330 (-)	1371	WP_263110971.1	pyridoxal-phosphate dependent enzyme	-
OCJ37_RS17535 (OCJ37_17535)	-	4108323..4108454 (+)	132	WP_263110972.1	hypothetical protein	-
OCJ37_RS17540 (OCJ37_17540)	-	4108532..4108756 (-)	225	WP_263110973.1	YdcH family protein	-
OCJ37_RS17545 (OCJ37_17545)	-	4109095..4109991 (-)	897	WP_263110974.1	OmpA family protein	-
OCJ37_RS17550 (OCJ37_17550)	-	4109988..4110380 (-)	393	WP_263110975.1	DUF4398 domain-containing protein	-
OCJ37_RS17555 (OCJ37_17555)	pilU	4110480..4111625 (+)	1146	WP_263110976.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
OCJ37_RS17560 (OCJ37_17560)	maiA	4111737..4112396 (-)	660	WP_263110977.1	maleylacetoacetate isomerase	-
OCJ37_RS17565 (OCJ37_17565)	-	4112486..4113475 (-)	990	WP_263110978.1	fumarylacetoacetate hydrolase family protein	-
OCJ37_RS17570 (OCJ37_17570)	-	4113849..4115207 (+)	1359	WP_263110979.1	DEAD/DEAH box helicase	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 42285.64 Da
• Isoelectric Point: 6.4456

>NTDB_id=736193 OCJ37_RS17555 WP_263110976.1 4110480..4111625(+) (pilU) [Xanthomonas sp. AM6]
MDIGYFLKLMTEKNASDMFLTTGAPVYIKIEGKLYPLGATGLPPGMVKKIAYSLMDEGQVPQFERELELNMAIALQDAGR
FRVNVFKQRGEVGMVIRAIRSKIPSIEELHLPQVLKDVIMTPRGLVLVVGSTGSGKSTSLASMIDHRNSTTTGHILTIED
PIEYLHKHKMSIVNQREVGLDTHAFHNALKNAMREAPDVILIGEILDATTMEAAIAFAETGHLCLATLHSNNADQTIERI
LNFFPESAHKNVLMNLALNLRAVISQRLVKDKNERRRPATEVLLNTPMIRDLLRRGQVHEIKQAMEESLEEGMETFDQCL
FRMVKQGQIEQEEALRAADSRDGLALKFRLSEGASGEHDPYADYDAGSGGASSPRITHGFV

Nucleotide

• Length: 1146 bp

>NTDB_id=736193 OCJ37_RS17555 WP_263110976.1 4110480..4111625(+) (pilU) [Xanthomonas sp. AM6]
ATGGATATCGGCTACTTCCTGAAGCTGATGACCGAAAAGAACGCCTCGGACATGTTCCTGACCACGGGAGCACCGGTCTA
TATCAAGATCGAAGGCAAGCTGTACCCGCTCGGCGCCACCGGCCTGCCGCCGGGCATGGTCAAGAAGATCGCCTACTCGC
TGATGGACGAGGGCCAGGTGCCGCAGTTCGAGCGCGAGCTGGAACTGAACATGGCCATCGCGCTGCAGGACGCCGGCCGC
TTCCGGGTCAACGTGTTCAAGCAGCGCGGCGAGGTCGGCATGGTGATCCGCGCGATCCGCAGCAAGATCCCCAGCATCGA
GGAACTGCACCTGCCGCAGGTGCTCAAGGACGTGATCATGACCCCGCGCGGGCTGGTGCTGGTGGTCGGCTCGACCGGCT
CGGGCAAGTCCACCTCGCTGGCGTCGATGATCGACCACCGCAACAGCACCACCACCGGGCACATCCTCACCATCGAGGAC
CCGATCGAATACCTGCACAAGCACAAGATGTCCATCGTCAACCAGCGCGAGGTCGGCCTGGACACCCACGCCTTCCACAA
CGCGCTGAAGAACGCGATGCGCGAGGCGCCGGACGTGATCCTGATCGGCGAGATCCTGGACGCGACGACGATGGAAGCGG
CGATCGCCTTCGCCGAGACCGGCCACCTGTGCCTGGCCACGCTGCACTCCAACAACGCCGACCAGACCATCGAGCGCATC
CTCAACTTCTTCCCCGAGAGCGCGCACAAGAACGTGCTGATGAACCTGGCGCTGAACCTGCGCGCGGTGATCTCCCAGCG
CCTGGTCAAGGACAAGAACGAGCGCCGCCGCCCGGCCACCGAAGTGCTGCTGAACACGCCGATGATCCGCGACCTGCTGC
GCCGCGGCCAGGTGCACGAGATCAAGCAGGCGATGGAGGAATCGCTGGAGGAAGGCATGGAGACCTTCGACCAGTGCCTG
TTCCGGATGGTCAAGCAGGGCCAGATCGAGCAGGAGGAAGCGCTGCGCGCGGCCGACTCGCGCGACGGCCTGGCGCTGAA
GTTCCGCCTGTCCGAGGGCGCCAGCGGCGAGCACGATCCCTACGCCGACTACGACGCCGGTAGCGGCGGCGCCAGTTCGC
CGCGGATCACCCACGGTTTCGTCTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (47-270)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	50.975	94.226	0.48
pilU	Vibrio cholerae strain A1552	48.238	96.85	0.467
pilU	Acinetobacter baylyi ADP1	49.3	93.701	0.462
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	45.531	93.963	0.428
pilT	Pseudomonas aeruginosa PAK	42.308	88.714	0.375
pilT	Acinetobacter baumannii D1279779	41.124	88.714	0.365
pilT	Acinetobacter baumannii strain A118	41.124	88.714	0.365
pilT	Acinetobacter nosocomialis M2	41.124	88.714	0.365