Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   P8R99_RS01370 Genome accession   NZ_CP121160
Coordinates   237203..238273 (+) Length   356 a.a.
NCBI ID   WP_000817926.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain S5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 232203..243273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R99_RS01355 - 233608..234294 (+) 687 WP_000280308.1 SatD family protein -
  P8R99_RS01360 - 234284..235057 (+) 774 WP_000622403.1 DUF3307 domain-containing protein -
  P8R99_RS01365 - 235090..236751 (-) 1662 WP_000093971.1 peptide ABC transporter substrate-binding protein -
  P8R99_RS01370 xerS 237203..238273 (+) 1071 WP_000817926.1 tyrosine recombinase XerS Machinery gene
  P8R99_RS01375 - 238316..239254 (-) 939 WP_278043327.1 sensor histidine kinase -
  P8R99_RS01380 braR 239251..239919 (-) 669 WP_000076365.1 response regulator transcription factor Regulator
  P8R99_RS01385 - 240029..241984 (-) 1956 WP_000499554.1 FtsX-like permease family protein -
  P8R99_RS01390 - 241986..242738 (-) 753 WP_000923535.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41408.61 Da        Isoelectric Point: 9.4625

>NTDB_id=736192 P8R99_RS01370 WP_000817926.1 237203..238273(+) (xerS) [Streptococcus agalactiae strain S5]
MKRELLLEKIDELKEIMPWYVLEYYQSKLSVPYSFTTLYEYLKEYRRFFEWLLDSGVANCHHIAEIELSVLENLTKKDME
AFILYLRERPLLNANTRQNGVSQTTINRTLSALSSLFKYLTEEVENADGEPYFYRNVMKKLSTKKKKETLASRAENIKQK
LFLGNETIEFLEYINCEYQNKLSKRALAFFNKNKERDLAIIALLLASGVRLSEAVNLDLKDINLNVMVIDVTRKGGKRDS
VNVASFAKPYLANYLDIRKNRYKAENQDIALFLSEYRGVPNRIDASSVEKMVAKYSQDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=736192 P8R99_RS01370 WP_000817926.1 237203..238273(+) (xerS) [Streptococcus agalactiae strain S5]
ATGAAACGTGAATTACTACTCGAAAAAATCGATGAACTAAAAGAAATTATGCCTTGGTATGTTCTAGAATATTATCAATC
AAAGCTTTCTGTTCCTTATAGTTTCACAACACTCTACGAATATTTAAAAGAATATAGACGTTTTTTTGAATGGTTATTGG
ATTCTGGTGTTGCTAATTGTCATCATATTGCAGAAATTGAGCTTTCAGTTTTAGAAAACCTTACTAAAAAAGATATGGAA
GCTTTTATACTATATTTACGAGAACGCCCTTTATTAAATGCTAACACAAGGCAAAATGGGGTGTCTCAAACCACCATTAA
CAGAACTCTATCTGCCTTATCTAGTCTTTTCAAATACCTTACTGAAGAGGTTGAGAATGCTGACGGGGAGCCTTACTTTT
ATCGCAATGTCATGAAAAAACTCTCAACCAAAAAGAAAAAGGAAACTTTAGCTTCTCGGGCAGAAAATATTAAACAAAAG
TTATTTTTGGGCAATGAAACGATAGAATTCTTAGAGTATATAAATTGTGAATATCAAAACAAACTTTCCAAACGTGCTTT
AGCTTTTTTCAACAAAAATAAAGAGAGAGATTTAGCTATTATTGCTTTGCTACTAGCTTCAGGAGTGCGTCTATCTGAGG
CAGTAAACTTAGATTTAAAGGATATTAACCTTAATGTAATGGTTATTGATGTCACACGAAAAGGGGGGAAAAGGGACTCT
GTCAATGTCGCTAGCTTTGCGAAGCCCTACCTTGCTAATTATTTAGACATCCGTAAAAATAGATACAAAGCAGAAAATCA
GGACATTGCTCTATTTTTATCAGAATACCGTGGGGTGCCAAATCGTATTGATGCTTCAAGTGTAGAGAAAATGGTTGCTA
AGTATTCCCAGGATTTTAAGGTTCGTGTAACACCTCATAAACTAAGGCATACTCTTGCTACTAGGCTATATGATGCTACA
AAATCTCAAGTATTAGTTAGTCACCAACTAGGTCATGCTTCCACTCAAGTTACTGACCTATATACCCATATTGTTAACGA
TGAACAAAAGAACGCTTTAGACAAACTCTAG

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(184-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.427

100

0.834