Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   OCJ37_RS05200 Genome accession   NZ_CP106869
Coordinates   1241868..1243256 (-) Length   462 a.a.
NCBI ID   WP_263112624.1    Uniprot ID   -
Organism   Xanthomonas sp. AM6     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1232963..1249279 1241868..1243256 within 0


Gene organization within MGE regions


Location: 1232963..1249279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCJ37_RS05165 (OCJ37_05165) - 1232963..1234081 (-) 1119 WP_263112617.1 glycosyltransferase family 4 protein -
  OCJ37_RS05170 (OCJ37_05170) - 1234482..1235357 (+) 876 WP_263112618.1 FkbM family methyltransferase -
  OCJ37_RS05175 (OCJ37_05175) - 1235354..1236517 (+) 1164 WP_263112619.1 glycosyltransferase -
  OCJ37_RS05180 (OCJ37_05180) - 1236462..1237742 (-) 1281 WP_263112620.1 oligosaccharide flippase family protein -
  OCJ37_RS05185 (OCJ37_05185) - 1237739..1238941 (-) 1203 WP_263112621.1 glycosyltransferase -
  OCJ37_RS05190 (OCJ37_05190) - 1238964..1239821 (-) 858 WP_263112622.1 glycosyltransferase family 2 protein -
  OCJ37_RS05195 (OCJ37_05195) pilB 1239974..1241713 (+) 1740 WP_263112623.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OCJ37_RS05200 (OCJ37_05200) pilR 1241868..1243256 (-) 1389 WP_263112624.1 sigma-54 dependent transcriptional regulator Regulator
  OCJ37_RS05205 (OCJ37_05205) - 1243332..1244945 (-) 1614 WP_263112625.1 ATP-binding protein -
  OCJ37_RS05210 (OCJ37_05210) sucC 1245230..1246393 (+) 1164 WP_263112626.1 ADP-forming succinate--CoA ligase subunit beta -
  OCJ37_RS05215 (OCJ37_05215) sucD 1246417..1247289 (+) 873 WP_263112627.1 succinate--CoA ligase subunit alpha -
  OCJ37_RS05220 (OCJ37_05220) - 1247342..1249279 (+) 1938 WP_263112628.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49809.25 Da        Isoelectric Point: 6.5829

>NTDB_id=736181 OCJ37_RS05200 WP_263112624.1 1241868..1243256(-) (pilR) [Xanthomonas sp. AM6]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIARHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIHVLRGLVKHALELNNAERAAPPPAPPEQASRLLGASTAMDALRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLPMQVKLLRAIQEKSVRPVGAATEVPTDVRILSATHKDLADLVADGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAILARLAKSHGRITPLLSPSALDALNRYAFPGNVRELENILERALAMAEDDQISAADLHLPQPGNSARAAAEAAPA
LPPGVVDIDPTSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=736181 OCJ37_RS05200 WP_263112624.1 1241868..1243256(-) (pilR) [Xanthomonas sp. AM6]
ATGAACGAAACCCGAAGCGCCCTTGTCGTCGATGACGAACGCGACATCCGCGAACTGCTGGTGCTGACCCTGGGCCGGAT
GGGGCTGCGCATCAGCACCGCCGCCAATCTCGCCGAAGCCCGCGAACTGCTGGCCAGCAACCCCTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAGCTGGTCAGCGAGATCGCCCGCCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCCACGTGCTGCGCGGCCTGGTCAAGCATGCCCTGGAACTCAACAACGCCGAGCGCGCCGCGCCGCCGCCGGCGC
CGCCGGAGCAGGCCAGCCGCCTGCTCGGCGCCTCGACCGCGATGGACGCGCTGCGCGCCACCATCGCCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCCTCGGCGAGTCCGGGGTCGGCAAGGAACTGGTCGCGCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCGTGCCGGTCAATTGCGGCGCGATCCCGGCCGAACTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACCAGGCCGGCCTGTTCCAGGCTGCGCACGGCGGCACCCTGTTCCTGGAC
GAAGTGGCCGAGCTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAATCGGTGCGCCCGGTCGGCGC
CGCCACCGAGGTCCCGACCGACGTGCGCATCCTGTCGGCCACCCACAAGGACCTGGCCGACCTGGTCGCCGACGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCGATCCTGGCGCGGCTGGCCAAGAGCCATGGCCGGATCACTCCGCTGCTGTCGCCCTCGGCGCTGGA
CGCCCTGAACCGCTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAACGCGCCCTGGCGATGGCCGAGG
ACGACCAGATCAGCGCCGCCGACCTGCACCTGCCGCAGCCCGGCAACAGCGCCCGCGCCGCGGCCGAAGCCGCCCCCGCG
CTGCCGCCCGGCGTAGTCGACATCGACCCCACCTCCTCCGCCCTGCCCTCCTACATCGAGCAGCTCGAGCGCGCCGCGAT
CCAGAAGGCGCTGGAAGAGAACCGCTGGAACAAGACTCGCACCGCAGCGCAGTTGGGCATCACCTTCCGCGCGCTGCGCT
ACAAGCTCAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Response regulator receiver domain (Response_reg)

(8-114)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.527

99.351

0.621
  pilR Acinetobacter baumannii strain A118

47.3

100

0.474