Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   OCI51_RS25170 Genome accession   NZ_CP106862
Coordinates   4893350..4893916 (-) Length   188 a.a.
NCBI ID   WP_054548816.1    Uniprot ID   -
Organism   Lysinibacillus capsici strain FN9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4888350..4898916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCI51_RS25155 (OCI51_25155) - 4889644..4890837 (+) 1194 WP_257520873.1 MFS transporter -
  OCI51_RS25160 (OCI51_25160) - 4890948..4892402 (+) 1455 WP_257520874.1 Msr family ABC-F type ribosomal protection protein -
  OCI51_RS25165 (OCI51_25165) rpsR 4892819..4893055 (-) 237 WP_012296211.1 30S ribosomal protein S18 -
  OCI51_RS25170 (OCI51_25170) ssbA 4893350..4893916 (-) 567 WP_054548816.1 single-stranded DNA-binding protein Machinery gene
  OCI51_RS25175 (OCI51_25175) rpsF 4893960..4894247 (-) 288 WP_016992320.1 30S ribosomal protein S6 -
  OCI51_RS25180 (OCI51_25180) - 4894424..4894993 (+) 570 WP_257520875.1 DUF3267 domain-containing protein -
  OCI51_RS25185 (OCI51_25185) - 4895061..4896101 (-) 1041 WP_257520876.1 acyl-CoA dehydrogenase -
  OCI51_RS25190 (OCI51_25190) ychF 4896187..4897287 (-) 1101 WP_016994923.1 redox-regulated ATPase YchF -
  OCI51_RS25195 (OCI51_25195) - 4897385..4897585 (-) 201 WP_257520877.1 DUF951 domain-containing protein -
  OCI51_RS25200 (OCI51_25200) - 4897587..4898459 (-) 873 WP_257520878.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20537.50 Da        Isoelectric Point: 4.7719

>NTDB_id=736159 OCI51_RS25170 WP_054548816.1 4893350..4893916(-) (ssbA) [Lysinibacillus capsici strain FN9]
MINRVVLVGRLTKDPELRYTPNGVASTRFTVAVNRAFSNQQGEREADFISCVAWRKQAENLANFMRKGSLIGVEGRIQTG
SYEGQDGKRVYTTDVVADSVQFLEPRNGSGAPAPQYGGQTYGNNQPSYGGGQPQQQFSGAMPGQGSYGGDSYQQNQPPMN
QPNYTRVDEDPFANSKGPIEVSEDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=736159 OCI51_RS25170 WP_054548816.1 4893350..4893916(-) (ssbA) [Lysinibacillus capsici strain FN9]
ATGATTAACCGTGTCGTATTAGTTGGAAGACTAACAAAAGATCCTGAGCTACGTTATACACCGAATGGAGTTGCGTCTAC
AAGATTTACAGTAGCTGTAAACCGTGCATTCTCAAATCAACAAGGTGAACGCGAAGCTGATTTCATTAGCTGTGTTGCTT
GGCGTAAACAGGCTGAAAACCTAGCGAACTTCATGCGAAAAGGAAGTTTAATTGGGGTAGAAGGTCGTATCCAGACAGGC
AGTTATGAAGGACAAGATGGTAAGCGAGTATACACAACAGATGTCGTGGCGGATAGCGTACAGTTTTTAGAACCCCGTAA
TGGTAGCGGTGCTCCTGCTCCTCAATATGGTGGACAAACTTACGGTAATAACCAACCGTCATATGGCGGTGGTCAACCAC
AACAACAGTTTAGTGGCGCTATGCCAGGGCAGGGTTCCTATGGCGGCGATTCGTATCAGCAAAATCAACCACCTATGAAT
CAGCCGAATTATACACGTGTAGATGAGGATCCATTTGCGAATAGCAAAGGGCCAATAGAAGTATCTGAGGATGATCTTCC
ATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.319

100

0.553
  ssb Latilactobacillus sakei subsp. sakei 23K

47.34

100

0.473