Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   P8R98_RS09005 Genome accession   NZ_CP121159
Coordinates   1834841..1835539 (+) Length   232 a.a.
NCBI ID   WP_044979922.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain S1     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1829841..1840539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R98_RS08985 - 1832341..1832502 (-) 162 WP_000794682.1 lacticin 481 family lantibiotic -
  P8R98_RS08990 - 1832967..1833122 (-) 156 WP_000410306.1 lacticin 481 family lantibiotic -
  P8R98_RS08995 - 1833151..1833306 (-) 156 WP_000410306.1 lacticin 481 family lantibiotic -
  P8R98_RS09000 - 1833422..1834599 (+) 1178 Protein_1733 IS256-like element ISSag11 family transposase -
  P8R98_RS09005 scnR 1834841..1835539 (+) 699 WP_044979922.1 response regulator transcription factor Regulator
  P8R98_RS09010 - 1835556..1836917 (+) 1362 WP_278043436.1 HAMP domain-containing sensor histidine kinase -
  P8R98_RS09015 - 1836997..1838862 (-) 1866 WP_252530444.1 SAG1250 family conjugative relaxase -
  P8R98_RS09020 - 1838849..1839214 (-) 366 WP_044979925.1 plasmid mobilization relaxosome protein MobC -
  P8R98_RS09025 - 1839224..1839583 (-) 360 WP_044979926.1 SAG1252 family conjugative relaxosome accessory protein -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26007.01 Da        Isoelectric Point: 7.1342

>NTDB_id=736150 P8R98_RS09005 WP_044979922.1 1834841..1835539(+) (scnR) [Streptococcus agalactiae strain S1]
MNFETQLLNKRILIIDDDVSLSQSIKEVLVNRGFKNISNAYSISEGIDIFSVSKIDFIILDVMLPDGEGYLLAKYVRKTS
DIPILFLTAKNNPDDEVKGLGSGGDDFVTKPFLPKTLIYRIIALLRRAYKNESELVTLSSCTIDLNNASVNKNGNQLSLT
PTEIQILRKLYSNKNYIVSTETICDTIWGLDSSGYEKSLMVHIRNIREKIESSPSKPDHLITVKGLGYKLVV

Nucleotide


Download         Length: 699 bp        

>NTDB_id=736150 P8R98_RS09005 WP_044979922.1 1834841..1835539(+) (scnR) [Streptococcus agalactiae strain S1]
ATGAATTTTGAAACACAGTTATTAAACAAACGGATATTAATAATAGATGACGATGTCTCACTTAGTCAATCTATCAAAGA
GGTATTAGTCAATAGAGGATTTAAAAATATTAGTAACGCTTATAGTATTAGCGAGGGCATTGATATTTTTTCTGTATCCA
AGATTGATTTCATCATATTAGATGTAATGTTACCTGATGGTGAGGGGTATTTACTTGCCAAATATGTTAGAAAAACTTCT
GATATTCCAATATTATTTTTAACAGCAAAAAATAATCCTGATGATGAAGTTAAAGGCCTTGGATCAGGTGGTGATGATTT
TGTCACTAAACCATTTCTCCCGAAAACCTTAATATATCGTATCATTGCTCTATTAAGAAGAGCATACAAAAATGAATCCG
AATTAGTTACATTGTCTTCTTGTACCATTGATTTAAATAATGCAAGTGTAAATAAAAATGGAAATCAACTTTCACTAACT
CCTACTGAAATACAGATACTACGAAAACTATACAGTAATAAGAACTACATTGTTTCAACAGAAACAATTTGTGATACTAT
TTGGGGACTTGATAGTTCTGGATATGAAAAGTCATTAATGGTACACATTCGAAATATAAGAGAAAAAATAGAATCAAGCC
CTTCTAAACCGGATCATCTTATTACCGTTAAAGGTCTTGGATATAAGCTTGTTGTCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(12-121)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

41.379

100

0.414
  vicR Streptococcus mutans UA159

36.797

99.569

0.366