Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   P8R98_RS08030 Genome accession   NZ_CP121159
Coordinates   1627115..1627711 (-) Length   198 a.a.
NCBI ID   WP_000966735.1    Uniprot ID   Q3K1U0
Organism   Streptococcus agalactiae strain S1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1622115..1632711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R98_RS08010 - 1622192..1622878 (-) 687 WP_047212119.1 YwaF family protein -
  P8R98_RS08015 - 1623007..1624227 (-) 1221 WP_000793490.1 OFA family MFS transporter -
  P8R98_RS08020 murF 1624414..1625781 (-) 1368 WP_000777512.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  P8R98_RS08025 - 1625928..1626974 (-) 1047 WP_000032510.1 D-alanine--D-alanine ligase -
  P8R98_RS08030 recR 1627115..1627711 (-) 597 WP_000966735.1 recombination mediator RecR Machinery gene
  P8R98_RS08035 pbp2b 1627726..1629771 (-) 2046 WP_000934657.1 penicillin-binding protein PBP2B -
  P8R98_RS08040 - 1629900..1630592 (-) 693 WP_000240135.1 phosphoglycerate mutase -
  P8R98_RS08045 tpiA 1630769..1631527 (-) 759 WP_000087883.1 triose-phosphate isomerase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21619.82 Da        Isoelectric Point: 4.5632

>NTDB_id=736142 P8R98_RS08030 WP_000966735.1 1627115..1627711(-) (recR) [Streptococcus agalactiae strain S1]
MLYPTPIAKLIDSFSKLPGIGTKTATRLAFYTIGMSDEDVNEFAKNLLAAKRELTYCSVCGNLTDDDPCLICTDKTRDQS
VILVVEDSKDVSAMEKIQEYNGLYHVLHGLISPMNGISPDDINLKSLITRLMDGQVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=736142 P8R98_RS08030 WP_000966735.1 1627115..1627711(-) (recR) [Streptococcus agalactiae strain S1]
ATGCTTTACCCAACACCAATTGCTAAATTGATTGACAGCTTTTCAAAATTACCGGGTATAGGTACTAAAACAGCAACACG
TTTAGCTTTTTACACCATTGGTATGAGTGATGAAGATGTTAATGAATTTGCTAAGAATTTATTAGCTGCTAAGCGGGAAT
TAACCTATTGTTCTGTTTGTGGTAATTTGACTGATGATGATCCTTGCTTAATTTGTACAGATAAGACGCGTGACCAGTCT
GTTATCTTGGTTGTTGAAGATAGCAAAGATGTGTCAGCTATGGAAAAAATTCAAGAGTATAATGGTTTGTATCATGTCTT
ACATGGCTTAATTTCACCTATGAATGGTATTAGCCCTGATGACATTAATTTGAAAAGTTTAATTACTCGATTGATGGATG
GTCAGGTGACAGAAGTTATTGTTGCTACCAATGCGACTGCTGATGGTGAAGCTACATCAATGTATATTTCACGAGTCTTA
AAACCAGCTGGTATCAAAGTGACACGATTAGCGAGAGGTTTAGCTGTTGGTTCAGATATCGAATATGCAGATGAAGTAAC
CTTGCTTCGAGCAATCGAAAATCGTACAGAGTTATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(39-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3K1U0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

88.384

100

0.884
  recR Bacillus subtilis subsp. subtilis str. 168

66.667

100

0.667
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485