Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   P8R98_RS07110 Genome accession   NZ_CP121159
Coordinates   1417156..1418226 (+) Length   356 a.a.
NCBI ID   WP_161501862.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain S1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1412156..1423226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R98_RS07095 - 1413618..1414304 (+) 687 WP_278043410.1 SatD family protein -
  P8R98_RS07100 - 1414294..1415061 (+) 768 WP_278043411.1 DUF3307 domain-containing protein -
  P8R98_RS07105 - 1415027..1416697 (-) 1671 WP_278043412.1 peptide ABC transporter substrate-binding protein -
  P8R98_RS07110 xerS 1417156..1418226 (+) 1071 WP_161501862.1 tyrosine recombinase XerS Machinery gene
  P8R98_RS07115 - 1418269..1419207 (-) 939 WP_000620982.1 sensor histidine kinase -
  P8R98_RS07120 braR 1419204..1419872 (-) 669 WP_278043413.1 response regulator transcription factor Regulator
  P8R98_RS07125 - 1419982..1421937 (-) 1956 WP_069986755.1 FtsX-like permease family protein -
  P8R98_RS07130 - 1421939..1422691 (-) 753 WP_069986191.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41369.53 Da        Isoelectric Point: 9.3616

>NTDB_id=736132 P8R98_RS07110 WP_161501862.1 1417156..1418226(+) (xerS) [Streptococcus agalactiae strain S1]
MKRELLLEKIDELKEIMPWYVLEYYQSKLSVPYSFTTLYEYLKEYRRFFEWLLDSGVANCHHIAEIELSVLENLTKKDME
AFILYLRERPLLNANTRQNGVSQTTINRTLAALSSLFKYLTEEVENADGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGNETIEFLEYIDCEYQNKLSKRALAFFNKNKERDLAIIALLLASGVRLSEAVNLDLKDINLNVMVIDVTRKGGKRDS
VNVASFAKPYLANYLDIRKNRYKAENQDIALFLSEYRGVSNRIDASSVEKMVAKYSQDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=736132 P8R98_RS07110 WP_161501862.1 1417156..1418226(+) (xerS) [Streptococcus agalactiae strain S1]
ATGAAACGTGAATTACTACTCGAAAAAATCGATGAACTAAAAGAAATTATGCCTTGGTATGTTCTAGAATATTATCAATC
AAAGCTTTCTGTTCCTTATAGTTTCACAACACTCTACGAATATTTAAAAGAATATAGACGTTTTTTTGAATGGTTATTGG
ATTCTGGTGTTGCTAATTGTCATCATATTGCAGAAATTGAGCTTTCAGTTTTAGAAAACCTTACTAAGAAAGATATGGAA
GCTTTTATACTATATTTACGAGAACGCCCTTTATTAAATGCTAACACAAGGCAAAATGGGGTGTCTCAAACCACCATTAA
CAGAACTCTAGCTGCCTTATCTAGTCTTTTCAAATACCTTACTGAAGAGGTTGAGAATGCTGACGGGGAGCCTTACTTTT
ATCGCAATGTCATGAAAAAAGTCTCAACCAAAAAGAAAAAGGAAACTTTAGCTTCTCGGGCAGAAAATATTAAACAAAAG
TTATTTTTGGGCAATGAAACGATAGAATTCTTAGAGTATATAGATTGTGAATACCAAAACAAACTTTCCAAACGTGCTTT
AGCTTTTTTCAACAAAAATAAAGAGAGAGATTTAGCTATTATTGCTTTGCTACTAGCTTCAGGAGTGCGTCTATCTGAGG
CAGTAAACTTAGATTTAAAGGATATTAACCTTAATGTAATGGTTATTGATGTCACACGAAAAGGAGGGAAACGGGACTCT
GTCAATGTCGCTAGCTTTGCGAAACCCTATCTTGCTAATTATTTAGACATCCGTAAAAATAGATACAAAGCAGAAAATCA
GGACATTGCACTATTTTTATCAGAATACCGTGGGGTGTCAAATCGTATTGATGCTTCAAGTGTTGAGAAAATGGTCGCTA
AATATTCCCAGGATTTTAAGGTTCGTGTAACACCTCATAAACTAAGGCATACTCTTGCTACTAGGCTATATGATGCTACA
AAATCTCAAGTATTAGTTAGCCACCAATTAGGTCATGCTTCCACTCAAGTTACTGACCTATATACCCATATTGTTAACGA
TGAACAAAAGAACGCTTTAGACAAACTATAG

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(184-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.427

100

0.834