Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   P8R98_RS01280 Genome accession   NZ_CP121159
Coordinates   215553..216662 (-) Length   369 a.a.
NCBI ID   WP_000264870.1    Uniprot ID   Q3JYE9
Organism   Streptococcus agalactiae strain S1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 210553..221662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R98_RS01260 guaB 210839..212320 (+) 1482 WP_000073397.1 IMP dehydrogenase -
  P8R98_RS01265 - 212395..213057 (+) 663 WP_001873330.1 helix-turn-helix transcriptional regulator -
  P8R98_RS01270 - 213113..213979 (+) 867 WP_000398683.1 GRP family sugar transporter -
  P8R98_RS01275 - 213991..215445 (-) 1455 WP_031463830.1 IS1182-like element IS1563 family transposase -
  P8R98_RS01280 recF 215553..216662 (-) 1110 WP_000264870.1 DNA replication/repair protein RecF Machinery gene
  P8R98_RS01285 yaaA 216625..217017 (-) 393 WP_278043478.1 S4 domain-containing protein YaaA -
  P8R98_RS01290 - 217256..218500 (+) 1245 WP_000706188.1 pitrilysin family protein -
  P8R98_RS01295 - 218502..219785 (+) 1284 WP_161501972.1 pitrilysin family protein -
  P8R98_RS01300 pgsA 219908..220450 (+) 543 WP_000239225.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  P8R98_RS01305 - 220450..221289 (+) 840 WP_000181757.1 energy-coupling factor ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 42471.27 Da        Isoelectric Point: 7.3132

>NTDB_id=736091 P8R98_RS01280 WP_000264870.1 215553..216662(-) (recF) [Streptococcus agalactiae strain S1]
MWIKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKELVHFKHHDVQITGEVIRKSGH
LSLDIQLSEKGRITKVNHLKQAKLSDYIGAMTVVLFAPEDLQLVKGAPSLRRKFLDIDIGQIKPTYLAELSNYNHVLKQR
NTYLKTTNNVDKTFLSVLDEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEFTDKSSIREHFLN
QLSKSHSRDIFKKNTSIGPHRDDITFFINDINATFGSQGQQRSLILSLKLAEIELIKTVTNDYPILLLDDVMSELDNHRQ
LKLLEGIKENVQTFITTTSLEHLSALPDQLKIFNVSDGTISINEKKATD

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=736091 P8R98_RS01280 WP_000264870.1 215553..216662(-) (recF) [Streptococcus agalactiae strain S1]
ATGTGGATAAAAAATATTTCTTTAAAACATTATCGTAATTATGAAGAAGCACAAGTAGATTTTTCACCCAACCTCAATAT
TTTCATTGGCCGCAATGCTCAAGGAAAGACAAATTTTTTAGAAGCAATCTACTTCTTGGCTTTGACTCGAAGTCATCGTA
CCCGTTCTGATAAAGAACTTGTACATTTTAAACACCATGATGTACAAATTACAGGTGAGGTAATCCGCAAAAGCGGCCAT
CTTAGCTTAGATATTCAATTATCTGAAAAAGGAAGAATCACTAAGGTTAACCATCTTAAACAGGCAAAATTATCTGATTA
TATTGGGGCTATGACTGTCGTACTTTTTGCCCCTGAAGATCTTCAATTAGTTAAAGGTGCACCTAGCCTAAGACGGAAAT
TTTTAGATATAGATATTGGACAAATTAAGCCAACGTACTTAGCTGAACTTTCAAATTACAATCATGTATTAAAACAAAGA
AACACTTATCTAAAAACTACTAATAACGTCGACAAAACTTTTTTATCAGTCCTTGATGAACAATTAGCTGATTATGGAAG
TCGTGTCATTGAACACCGTTTTGATTTTATCCAAGCCCTAAATGATGAAGCGGACAAGCATCACTACATTATCAGTACTG
AGTTAGAACATTTATCTATTCACTACAAATCGTCAATAGAGTTTACAGATAAGTCAAGTATTAGGGAACATTTTTTAAAC
CAATTATCTAAAAGCCACTCAAGAGACATCTTTAAGAAAAACACAAGCATCGGACCTCATCGTGATGATATTACTTTCTT
TATTAATGATATCAATGCTACTTTTGGTAGCCAAGGGCAACAAAGAAGCCTTATTTTATCATTGAAATTAGCAGAAATTG
AGCTAATAAAAACCGTTACCAACGATTATCCGATTCTCTTACTTGACGACGTCATGAGTGAACTTGACAACCATCGTCAA
CTAAAACTCTTAGAGGGAATCAAAGAGAATGTTCAAACATTTATTACTACAACAAGTTTAGAGCATTTAAGTGCTTTACC
TGATCAACTCAAAATCTTTAATGTTAGTGATGGTACTATTAGTATTAATGAAAAAAAAGCAACAGATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-359)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3JYE9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

63.636

98.374

0.626
  recF Bacillus subtilis subsp. subtilis str. 168

44.837

99.729

0.447