Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   P6H86_RS17435 Genome accession   NZ_CP121157
Coordinates   3546258..3546995 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain E89     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3541258..3551995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6H86_RS17420 (P6H86_17420) clpC 3541712..3544285 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  P6H86_RS17425 (P6H86_17425) yfiH 3544415..3545146 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  P6H86_RS17430 (P6H86_17430) rluD 3545143..3546123 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  P6H86_RS17435 (P6H86_17435) comL 3546258..3546995 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  P6H86_RS17440 (P6H86_17440) raiA 3547266..3547607 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  P6H86_RS17445 (P6H86_17445) - 3547751..3548938 (+) 1188 WP_032187555.1 acyltransferase -
  P6H86_RS17450 (P6H86_17450) - 3549959..3551323 (-) 1365 Protein_3408 hypothetical protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=736058 P6H86_RS17435 WP_000197686.1 3546258..3546995(+) (comL) [Escherichia coli strain E89]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=736058 P6H86_RS17435 WP_000197686.1 3546258..3546995(+) (comL) [Escherichia coli strain E89]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376