Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   ND010_RS10325 Genome accession   NZ_CP106826
Coordinates   1962794..1963189 (+) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 9464     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1957794..1968189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ND010_RS10320 (ND010_10320) - 1962573..1962689 (+) 117 Protein_1982 competence protein ComE -
  ND010_RS10325 (ND010_10325) comE 1962794..1963189 (+) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  ND010_RS10330 (ND010_10330) - 1963713..1964042 (-) 330 Protein_1984 transposase -
  ND010_RS10335 (ND010_10335) dnaJ 1964176..1965297 (+) 1122 WP_003703320.1 molecular chaperone DnaJ -
  ND010_RS10340 (ND010_10340) - 1965492..1967510 (+) 2019 WP_003703318.1 OPT family oligopeptide transporter -
  ND010_RS10345 (ND010_10345) rfbC 1967554..1968111 (-) 558 WP_003690171.1 dTDP-4-dehydrorhamnose 3,5-epimerase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=735934 ND010_RS10325 WP_003703428.1 1962794..1963189(+) (comE) [Neisseria gonorrhoeae strain 9464]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=735934 ND010_RS10325 WP_003703428.1 1962794..1963189(+) (comE) [Neisseria gonorrhoeae strain 9464]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1