NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	ND010_RS08910	Genome accession	NZ_CP106826
Coordinates	1700145..1701005 (+)	Length	286 a.a.
NCBI ID	WP_260237063.1	Uniprot ID	-
Organism	Neisseria gonorrhoeae strain 9464
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1695145..1706005

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ND010_RS08895 (ND010_08895)	dapD	1695655..1696476 (-)	822	WP_003689804.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	-
ND010_RS08900 (ND010_08900)	pgi	1696686..1698329 (-)	1644	WP_003697594.1	glucose-6-phosphate isomerase	-
ND010_RS08905 (ND010_08905)	pilG	1698839..1700071 (+)	1233	WP_003689811.1	type 4 pilus assembly protein PilG	Machinery gene
ND010_RS08910 (ND010_08910)	pilD	1700145..1701005 (+)	861	WP_260237063.1	A24 family peptidase	Machinery gene
ND010_RS08915 (ND010_08915)	coaE	1701002..1701634 (+)	633	WP_003689816.1	dephospho-CoA kinase	-
ND010_RS08920 (ND010_08920)	-	1701627..1701836 (+)	210	WP_003696096.1	DNA gyrase inhibitor YacG	-
ND010_RS08925 (ND010_08925)	pilF	1701922..1703598 (-)	1677	WP_003703172.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ND010_RS08935 (ND010_08935)	-	1703936..1704382 (-)	447	WP_003689818.1	DUF441 domain-containing protein	-
ND010_RS08940 (ND010_08940)	-	1704386..1705360 (-)	975	WP_003705489.1	polyprenyl synthetase family protein	-
ND010_RS08945 (ND010_08945)	rplU	1705584..1705892 (+)	309	WP_003691838.1	50S ribosomal protein L21	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 31302.31 Da Isoelectric Point: 8.9561

                                >NTDB_id=735926 ND010_RS08910 WP_260237063.1 1700145..1701005(+) (pilD) [Neisseria gonorrhoeae strain 9464]

MSDLSVLSPFAVPLAAVLGLLVGSFLNVVIYRVPVMMERGWTVFAKEHLNLPLTDDESRTFNLMKPDSCCPKCRVPIRAW

QNIPIVSYLLLRGKCASCQTKISIRYPLIELLTGVLFGLVAWQYGWSWITLGGLILTAFLISLAFIDADTQYLPDSMTLP

LIWLGLIFNLDGGFVPLQSAVLGAVAGYSSLWLLCAVYKLLTGKTGMGNGDFKLIAALGAWLGISALPVLIFVSSLIGLV

AAIVMRVAKGRHFAFGPALTVSGWIIFTANDSVWRAVNWWLTHPVR

Nucleotide

Download Length: 861 bp

                                >NTDB_id=735926 ND010_RS08910 WP_260237063.1 1700145..1701005(+) (pilD) [Neisseria gonorrhoeae strain 9464]

ATGTCTGATTTGTCTGTATTGTCGCCGTTTGCCGTGCCTTTGGCAGCAGTTTTGGGGCTGCTGGTCGGCAGCTTCCTGAA

TGTCGTCATTTACCGCGTACCCGTTATGATGGAACGCGGCTGGACGGTATTTGCCAAAGAACATTTAAACCTGCCGCTGA

CCGACGATGAAAGCCGTACCTTCAACCTGATGAAGCCGGATTCCTGCTGTCCCAAATGCCGTGTGCCGATACGCGCGTGG

CAGAACATCCCGATTGTCAGTTACCTGCTCCTGCGCGGCAAATGCGCTTCCTGCCAAACCAAAATCAGCATACGTTATCC

CTTAATCGAGCTGCTGACCGGCGTATTGTTCGGGCTGGTCGCCTGGCAATACGGCTGGTCTTGGATTACGCTGGGCGGTT

TGATACTGACCGCGTTTCTGATTTCCCTGGCCTTTATCGATGCGGACACCCAATACCTGCCCGACTCGATGACATTACCC

TTGATCTGGCTGGGGCTGATATTTAATTTGGACGGCGGCTTCGTGCCTTTGCAGTCTGCCGTTTTAGGTGCGGTTGCCGG

CTATAGTTCATTATGGCTCTTATGTGCAGTGTATAAACTGCTCACAGGAAAAACCGGTATGGGCAACGGAGATTTCAAAC

TGATTGCCGCATTGGGCGCGTGGCTCGGCATATCCGCATTGCCCGTGCTGATTTTTGTTTCCTCTCTGATCGGTTTGGTC

GCGGCAATCGTTATGCGCGTCGCCAAGGGGCGGCATTTTGCCTTCGGCCCCGCACTGACAGTTTCGGGCTGGATAATTTT

TACGGCAAACGATTCCGTATGGCGGGCGGTCAACTGGTGGCTGACCCATCCGGTGAGATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)

Type IV leader peptidase family (Peptidase_A24)

(134-242)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Neisseria gonorrhoeae MS11	99.65	100	0.997
pilD	Vibrio cholerae strain A1552	44.444	100	0.448
pilD	Vibrio campbellii strain DS40M4	45.29	96.503	0.437
pilD	Acinetobacter baumannii D1279779	47.348	92.308	0.437
pilD	Acinetobacter nosocomialis M2	47.348	92.308	0.437

Detailed information NTG0735926