Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ND010_RS02330 Genome accession   NZ_CP106826
Coordinates   451551..452216 (+) Length   221 a.a.
NCBI ID   WP_260236888.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 9464     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 446551..457216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ND010_RS02305 (ND010_02305) cysT 446646..447482 (-) 837 WP_260236887.1 sulfate ABC transporter permease subunit CysT -
  ND010_RS02310 (ND010_02310) - 447663..447995 (+) 333 WP_003687908.1 hypothetical protein -
  ND010_RS02315 (ND010_02315) - 448354..448863 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  ND010_RS02320 (ND010_02320) - 449093..449674 (-) 582 WP_003701053.1 superoxide dismutase -
  ND010_RS02325 (ND010_02325) dnaB 449837..451243 (+) 1407 WP_241532347.1 replicative DNA helicase -
  ND010_RS02330 (ND010_02330) pilH 451551..452216 (+) 666 WP_260236888.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ND010_RS02335 (ND010_02335) pilI 452245..452853 (+) 609 WP_033910489.1 type IV pilus modification protein PilV Machinery gene
  ND010_RS02340 (ND010_02340) pilJ 452850..453818 (+) 969 WP_260236889.1 PilW family protein Machinery gene
  ND010_RS02345 (ND010_02345) pilK 453797..454405 (+) 609 WP_215318018.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ND010_RS02350 (ND010_02350) pilL 454407..454880 (+) 474 WP_260237126.1 PilX family type IV pilin Machinery gene
  ND010_RS02355 (ND010_02355) - 455492..455937 (-) 446 Protein_459 AzlC family ABC transporter permease -
  ND010_RS02360 (ND010_02360) dut 456103..456555 (+) 453 WP_260236890.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24631.90 Da        Isoelectric Point: 9.4249

>NTDB_id=735904 ND010_RS02330 WP_260236888.1 451551..452216(+) (pilH) [Neisseria gonorrhoeae strain 9464]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPAQVKKDGASN
NRCDFSKKGWRMLAFGDKNDNKAYDGDATDVFLRSVVLNDTDDSRINYAFNHIAFGSSQPTADRVVWTFNQNGTFGYSSD
QDLKNNSKFVYSDGYIQIVLTDARAVSDADRKFRSAVVLINSSGRVEVCRKNDTRAVCKHQ

Nucleotide


Download         Length: 666 bp        

>NTDB_id=735904 ND010_RS02330 WP_260236888.1 451551..452216(+) (pilH) [Neisseria gonorrhoeae strain 9464]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TTTCCAGGGGCGAAGCCGTTCGGCTCAATCTCCCTGTCTATATCTGTCCTGCCCAAGTTAAAAAAGACGGTGCGTCCAAC
AATAGATGTGACTTCAGCAAGAAGGGGTGGAGAATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGCGA
TGCGACGGATGTTTTCCTCCGCAGCGTGGTGTTGAATGATACCGACGACAGCCGGATTAATTATGCCTTCAACCATATCG
CTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACGTTCAACCAAAACGGGACATTCGGCTATTCATCCGAT
CAGGATCTCAAGAATAATTCCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGTTTC
AGATGCCGATAGGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACGATA
CGCGCGCCGTATGCAAACATCAATGA

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(44-204)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

94.091

99.548

0.937