Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NDL70_RS11150 Genome accession   NZ_CP106824
Coordinates   2107540..2107956 (-) Length   138 a.a.
NCBI ID   WP_229940837.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 9399     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2102540..2112956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDL70_RS11115 (NDL70_11115) pilA 2103164..2104417 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  NDL70_RS11120 (NDL70_11120) - 2104839..2104979 (-) 141 WP_179133147.1 hypothetical protein -
  NDL70_RS11125 (NDL70_11125) - 2104993..2105805 (-) 813 WP_263059790.1 opacity family porin -
  NDL70_RS11995 - 2106212..2106725 (-) 514 Protein_2149 pilin -
  NDL70_RS11140 (NDL70_11140) - 2107094..2107237 (-) 144 WP_012503975.1 hypothetical protein -
  NDL70_RS11150 (NDL70_11150) pilE 2107540..2107956 (-) 417 WP_229940837.1 pilin Machinery gene
  NDL70_RS11155 (NDL70_11155) lpxC 2108062..2108985 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  NDL70_RS12000 - 2109487..2110218 (-) 732 WP_406947483.1 pilin -
  NDL70_RS11175 (NDL70_11175) - 2110244..2110459 (-) 216 Protein_2154 pilin -
  NDL70_RS11180 (NDL70_11180) - 2110832..2110963 (-) 132 WP_010356054.1 hypothetical protein -
  NDL70_RS11185 (NDL70_11185) - 2111045..2111733 (-) 689 Protein_2156 SprT family zinc-dependent metalloprotease -
  NDL70_RS11190 (NDL70_11190) - 2111730..2112473 (-) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15174.96 Da        Isoelectric Point: 8.4727

>NTDB_id=735889 NDL70_RS11150 WP_229940837.1 2107540..2107956(-) (pilE) [Neisseria gonorrhoeae strain 9399]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYPNHGKWPEDNDKAGVANPTEIKGKYVKQVEVKNGVVTATMNSSNVNKEIK
GKKLSLWARREAGSVKWFCGQPVKRDDKDNDTVADAAGKDKIDTKHLPSTCRDPFSAS

Nucleotide


Download         Length: 417 bp        

>NTDB_id=735889 NDL70_RS11150 WP_229940837.1 2107540..2107956(-) (pilE) [Neisseria gonorrhoeae strain 9399]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCCGAATCACGGCAAATGGCCGGAAGACAACGACAAGGCCGGCGTGGCAAACCCCACCGAAATCAAAGGCA
AATATGTTAAGCAAGTTGAAGTCAAAAACGGCGTCGTCACCGCCACAATGAATTCAAGCAACGTAAACAAAGAAATCAAA
GGCAAAAAACTCTCCCTGTGGGCCAGGCGTGAAGCCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCGACGA
CAAAGACAACGACACCGTTGCCGACGCCGCCGGCAAAGACAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGACC
CGTTCTCTGCTAGCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

73.913

100

0.739
  pilE Neisseria gonorrhoeae strain FA1090

66.187

100

0.667