Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NDL70_RS10230 Genome accession   NZ_CP106824
Coordinates   1941182..1941577 (-) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 9399     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1936182..1946577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDL70_RS10210 (NDL70_10210) rfbC 1936259..1936816 (+) 558 WP_003690171.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  NDL70_RS10215 (NDL70_10215) - 1936860..1938878 (-) 2019 WP_003690172.1 OPT family oligopeptide transporter -
  NDL70_RS10220 (NDL70_10220) dnaJ 1939073..1940194 (-) 1122 WP_003690173.1 molecular chaperone DnaJ -
  NDL70_RS10225 (NDL70_10225) - 1940328..1940657 (+) 330 Protein_1977 transposase -
  NDL70_RS10230 (NDL70_10230) comE 1941182..1941577 (-) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  NDL70_RS10235 (NDL70_10235) - 1941682..1941798 (-) 117 Protein_1979 competence protein ComE -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=735883 NDL70_RS10230 WP_003703428.1 1941182..1941577(-) (comE) [Neisseria gonorrhoeae strain 9399]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=735883 NDL70_RS10230 WP_003703428.1 1941182..1941577(-) (comE) [Neisseria gonorrhoeae strain 9399]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1