Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   NDL70_RS02340 Genome accession   NZ_CP106824
Coordinates   451562..452227 (+) Length   221 a.a.
NCBI ID   WP_229940797.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 9399     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 446562..457227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDL70_RS02315 (NDL70_02315) cysT 446849..447676 (-) 828 WP_003699619.1 sulfate ABC transporter permease subunit CysT -
  NDL70_RS02320 (NDL70_02320) - 447857..448189 (+) 333 WP_003687908.1 hypothetical protein -
  NDL70_RS02325 (NDL70_02325) - 448516..449025 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  NDL70_RS02330 (NDL70_02330) - 449257..449838 (-) 582 WP_003690895.1 superoxide dismutase -
  NDL70_RS02335 (NDL70_02335) dnaB 450002..451408 (+) 1407 WP_003699622.1 replicative DNA helicase -
  NDL70_RS02340 (NDL70_02340) pilH 451562..452227 (+) 666 WP_229940797.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NDL70_RS02345 (NDL70_02345) pilV 452259..452870 (+) 612 WP_003699626.1 type IV pilus modification protein PilV Machinery gene
  NDL70_RS02350 (NDL70_02350) pilJ 452867..453826 (+) 960 WP_229940798.1 PilW family protein Machinery gene
  NDL70_RS02355 (NDL70_02355) pilK 453805..454416 (+) 612 WP_033911077.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NDL70_RS02360 (NDL70_02360) pilL 454418..454891 (+) 474 WP_229940840.1 PilX family type IV pilin Machinery gene
  NDL70_RS02365 (NDL70_02365) - 454961..455269 (-) 309 WP_025456177.1 AzlD family protein -
  NDL70_RS02370 (NDL70_02370) - 455266..455976 (-) 711 Protein_465 AzlC family ABC transporter permease -
  NDL70_RS02375 (NDL70_02375) dut 456142..456594 (+) 453 WP_003699637.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24676.09 Da        Isoelectric Point: 8.8981

>NTDB_id=735856 NDL70_RS02340 WP_229940797.1 451562..452227(+) (pilH) [Neisseria gonorrhoeae strain 9399]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQIANLLRFSRGEAVRLNLPVYICPVQVKKDGAPN
NRCDFSKKGWGMLAFGDKNGNKAYDGDVVDVFLRSVVLNDDINDKRIDYAFNHIAFGSSQPTADRVVWTFNQNGTFGYTT
DQHLTERSSFFYSDGYIQIVLTDARAVSDADKKFRSAVVLINSSGRVEVCPRNDRRAVCQH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=735856 NDL70_RS02340 WP_229940797.1 451562..452227(+) (pilH) [Neisseria gonorrhoeae strain 9399]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGCCCAAC
AATAGATGTGACTTCAGCAAGAAGGGGTGGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGCATATGACGGCGA
TGTGGTGGATGTTTTCCTCCGCAGCGTGGTATTGAATGATGATATCAATGATAAGCGGATTGATTATGCCTTCAACCATA
TCGCTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACGTTCAATCAAAACGGGACGTTCGGTTATACGACA
GACCAGCATCTTACAGAGCGATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTTGAAGTTTGCCCTAGAAACG
ATAGGCGTGCCGTATGCCAACATTAA

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

90.498

100

0.905