Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NDQ80_RS12115 Genome accession   NZ_CP106821
Coordinates   1954179..1954307 (-) Length   42 a.a.
NCBI ID   WP_263071070.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10529     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1949179..1959307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ80_RS10240 (NDQ80_10255) - 1950027..1950311 (-) 285 WP_003692093.1 GIY-YIG nuclease family protein -
  NDQ80_RS10245 (NDQ80_10260) pilC 1951219..1954179 (-) 2961 WP_317629742.1 PilC family type IV pilus tip adhesin Machinery gene
  NDQ80_RS12115 pilC 1954179..1954307 (-) 129 WP_263071070.1 hypothetical protein Machinery gene
  NDQ80_RS10250 (NDQ80_10265) - 1954994..1955257 (+) 264 WP_229433460.1 hypothetical protein -
  NDQ80_RS10255 (NDQ80_10270) gnd 1955337..1956785 (+) 1449 WP_003688061.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -
  NDQ80_RS10260 (NDQ80_10275) waaA 1956848..1958119 (+) 1272 WP_010360974.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  NDQ80_RS10265 (NDQ80_10280) - 1958160..1958609 (+) 450 WP_003688065.1 CopD family copper resistance protein -

Sequence

Protein


Download         Length: 42 a.a.        Molecular weight: 4883.82 Da        Isoelectric Point: 12.9831

>NTDB_id=735844 NDQ80_RS12115 WP_263071070.1 1954179..1954307(-) (pilC) [Neisseria gonorrhoeae strain 10529]
MNKTLKRQVFRHTALYAAILMFSHTGGRGGGRRRRKRINTLL

Nucleotide


Download         Length: 129 bp        

>NTDB_id=735844 NDQ80_RS12115 WP_263071070.1 1954179..1954307(-) (pilC) [Neisseria gonorrhoeae strain 10529]
ATGAATAAAACTTTGAAACGGCAGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GCGGGGGGGGGGCAGGCGCAGGCGCAAACGTATAAATACGCTATTGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

80.556

85.714

0.69