Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NDQ80_RS11075 Genome accession   NZ_CP106821
Coordinates   2102861..2103274 (-) Length   137 a.a.
NCBI ID   WP_260244444.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10529     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2097861..2108274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ80_RS11050 (NDQ80_11065) pilA 2098215..2099468 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  NDQ80_RS11055 (NDQ80_11070) - 2099584..2099724 (-) 141 WP_179133147.1 hypothetical protein -
  NDQ80_RS11060 (NDQ80_11075) - 2100298..2100999 (-) 702 WP_260244441.1 opacity family porin -
  NDQ80_RS11065 (NDQ80_11080) pilE 2101542..2102048 (-) 507 WP_260244442.1 pilin Machinery gene
  NDQ80_RS11070 (NDQ80_11085) - 2102663..2102743 (-) 81 Protein_2136 pilin -
  NDQ80_RS11075 (NDQ80_11090) pilE 2102861..2103274 (-) 414 WP_260244444.1 pilin Machinery gene
  NDQ80_RS11080 (NDQ80_11095) lpxC 2103380..2104303 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  NDQ80_RS12125 - 2104805..2105527 (-) 723 WP_406947493.1 pilin -
  NDQ80_RS11100 (NDQ80_11115) pilE 2105451..2105768 (-) 318 WP_003697861.1 pilin Machinery gene
  NDQ80_RS11105 (NDQ80_11120) - 2106141..2106272 (-) 132 WP_010356054.1 hypothetical protein -
  NDQ80_RS11110 (NDQ80_11125) - 2106354..2107042 (-) 689 Protein_2142 SprT family zinc-dependent metalloprotease -
  NDQ80_RS11115 (NDQ80_11130) - 2107039..2107782 (-) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15061.80 Da        Isoelectric Point: 6.4697

>NTDB_id=735840 NDQ80_RS11075 WP_260244444.1 2102861..2103274(-) (pilE) [Neisseria gonorrhoeae strain 10529]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNHGKWPEDNDKAGVASPDKIIGKYVKQVEVKNGVVTAEMASTGVNKEIQ
GKKLSLWARRQDGSVKWFCGQPVKRDDKDNDTVANDATNAIETKHLPSTCRDPFSAS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=735840 NDQ80_RS11075 WP_260244444.1 2102861..2103274(-) (pilE) [Neisseria gonorrhoeae strain 10529]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATCACGGCAAATGGCCGGAAGACAACGACAAGGCCGGCGTGGCATCCCCCGACAAAATCATAGGCA
AATATGTTAAGCAAGTTGAAGTCAAAAACGGCGTCGTCACCGCCGAAATGGCTTCAACCGGCGTAAACAAAGAAATCCAA
GGCAAAAAACTCTCCCTGTGGGCCAGGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCGACGA
CAAAGACAACGACACCGTTGCCAACGACGCCACCAACGCCATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGACCCGT
TCTCTGCTAGCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

72.464

100

0.73
  pilE Neisseria gonorrhoeae MS11

69.343

100

0.693