Detailed information
Bioinformatically predicted
Overview
| Name | pilL | Type | Machinery gene |
| Locus tag | NDQ80_RS02355 | Genome accession | NZ_CP106821 |
| Coordinates | 454162..454635 (+) | Length | 157 a.a. |
| NCBI ID | WP_172760650.1 | Uniprot ID | - |
| Organism | Neisseria gonorrhoeae strain 10529 | ||
| Function | type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 444489..506109 | 454162..454635 | within | 0 |
Gene organization within MGE regions
Location: 444489..506109
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NDQ80_RS02300 (NDQ80_02305) | - | 444489..445565 (-) | 1077 | WP_003692814.1 | sulfate/molybdate ABC transporter ATP-binding protein | - |
| NDQ80_RS02305 (NDQ80_02310) | cysW | 445562..446422 (-) | 861 | WP_003699617.1 | sulfate ABC transporter permease subunit CysW | - |
| NDQ80_RS02310 (NDQ80_02315) | cysT | 446611..447438 (-) | 828 | WP_003699619.1 | sulfate ABC transporter permease subunit CysT | - |
| NDQ80_RS02315 (NDQ80_02320) | - | 447619..447951 (+) | 333 | WP_003687908.1 | hypothetical protein | - |
| NDQ80_RS02320 (NDQ80_02325) | - | 448278..448787 (+) | 510 | WP_003687909.1 | isoprenylcysteine carboxyl methyltransferase family protein | - |
| NDQ80_RS02325 (NDQ80_02330) | - | 449019..449600 (-) | 582 | WP_003690895.1 | superoxide dismutase | - |
| NDQ80_RS02330 (NDQ80_02335) | dnaB | 449764..451170 (+) | 1407 | WP_003699622.1 | replicative DNA helicase | - |
| NDQ80_RS02335 (NDQ80_02340) | pilH | 451324..451989 (+) | 666 | WP_003699624.1 | Tfp pilus assembly protein FimT/FimU | Machinery gene |
| NDQ80_RS02340 (NDQ80_02345) | pilV | 452021..452632 (+) | 612 | WP_003699626.1 | type IV pilus modification protein PilV | Machinery gene |
| NDQ80_RS02345 (NDQ80_02350) | pilJ | 452629..453570 (+) | 942 | WP_047920195.1 | PilW family protein | Machinery gene |
| NDQ80_RS02350 (NDQ80_02355) | pilK | 453549..454160 (+) | 612 | WP_033911077.1 | PilX N-terminal domain-containing pilus assembly protein | Machinery gene |
| NDQ80_RS02355 (NDQ80_02360) | pilL | 454162..454635 (+) | 474 | WP_172760650.1 | PilX family type IV pilin | Machinery gene |
| NDQ80_RS02360 (NDQ80_02365) | - | 454705..455013 (-) | 309 | WP_025456177.1 | AzlD family protein | - |
| NDQ80_RS02365 (NDQ80_02370) | - | 455010..455720 (-) | 711 | Protein_464 | AzlC family ABC transporter permease | - |
| NDQ80_RS02370 (NDQ80_02375) | dut | 455886..456338 (+) | 453 | WP_003699637.1 | dUTP diphosphatase | - |
| NDQ80_RS02375 (NDQ80_02380) | dapC | 456414..457601 (+) | 1188 | WP_003699639.1 | succinyldiaminopimelate transaminase | - |
| NDQ80_RS02380 (NDQ80_02385) | yaaA | 457757..458536 (+) | 780 | WP_003699641.1 | peroxide stress protein YaaA | - |
| NDQ80_RS02395 (NDQ80_02400) | - | 459066..460258 (+) | 1193 | Protein_468 | tyrosine-type recombinase/integrase | - |
| NDQ80_RS02400 (NDQ80_02405) | - | 460614..460883 (-) | 270 | WP_003687928.1 | hypothetical protein | - |
| NDQ80_RS02405 (NDQ80_02410) | - | 461078..461761 (-) | 684 | WP_003687929.1 | DUF2786 domain-containing protein | - |
| NDQ80_RS11985 | - | 462042..462308 (-) | 267 | Protein_471 | hypothetical protein | - |
| NDQ80_RS02415 (NDQ80_02420) | - | 462419..462634 (-) | 216 | WP_003691538.1 | hypothetical protein | - |
| NDQ80_RS02420 (NDQ80_02425) | - | 462686..463177 (-) | 492 | WP_033911206.1 | siphovirus Gp157 family protein | - |
| NDQ80_RS02425 (NDQ80_02430) | - | 463174..463356 (-) | 183 | WP_003691535.1 | hypothetical protein | - |
| NDQ80_RS02430 (NDQ80_02435) | - | 463496..464182 (-) | 687 | WP_010357532.1 | phage replication initiation protein, NGO0469 family | - |
| NDQ80_RS02435 (NDQ80_02440) | - | 464251..464412 (-) | 162 | WP_003691530.1 | hypothetical protein | - |
| NDQ80_RS02440 (NDQ80_02445) | - | 464409..464684 (-) | 276 | WP_033911205.1 | NGO1622 family putative holin | - |
| NDQ80_RS02445 (NDQ80_02450) | - | 464837..465169 (-) | 333 | WP_003695500.1 | hypothetical protein | - |
| NDQ80_RS02450 (NDQ80_02455) | - | 465311..465601 (-) | 291 | WP_260244382.1 | hypothetical protein | - |
| NDQ80_RS02455 (NDQ80_02460) | - | 465598..466074 (-) | 477 | WP_002255718.1 | DUF6948 domain-containing protein | - |
| NDQ80_RS02460 (NDQ80_02465) | - | 466107..466307 (-) | 201 | WP_003692842.1 | hypothetical protein | - |
| NDQ80_RS02465 (NDQ80_02470) | - | 466791..467009 (+) | 219 | WP_003691731.1 | hypothetical protein | - |
| NDQ80_RS02470 (NDQ80_02475) | - | 467026..467385 (-) | 360 | WP_003691733.1 | hypothetical protein | - |
| NDQ80_RS02475 (NDQ80_02480) | - | 467386..467925 (-) | 540 | WP_003695998.1 | Panacea domain-containing protein | - |
| NDQ80_RS02480 (NDQ80_02485) | - | 468085..468801 (-) | 717 | WP_003695999.1 | helix-turn-helix transcriptional regulator | - |
| NDQ80_RS02485 (NDQ80_02490) | - | 469182..469409 (+) | 228 | WP_003698261.1 | helix-turn-helix domain-containing protein | - |
| NDQ80_RS02490 (NDQ80_02495) | - | 469527..470591 (+) | 1065 | WP_003689134.1 | hypothetical protein | - |
| NDQ80_RS02495 (NDQ80_02500) | - | 470588..471949 (+) | 1362 | WP_003700074.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| NDQ80_RS02500 (NDQ80_02505) | - | 471966..472217 (+) | 252 | WP_003693465.1 | hypothetical protein | - |
| NDQ80_RS02505 (NDQ80_02510) | - | 472231..472725 (+) | 495 | WP_003691434.1 | DUF3310 domain-containing protein | - |
| NDQ80_RS02510 (NDQ80_02515) | - | 472902..473051 (+) | 150 | WP_033911232.1 | phage associated protein | - |
| NDQ80_RS02515 (NDQ80_02520) | - | 473079..473360 (+) | 282 | WP_003689109.1 | hypothetical protein | - |
| NDQ80_RS02520 (NDQ80_02525) | - | 473351..473731 (+) | 381 | WP_033910829.1 | RusA family crossover junction endodeoxyribonuclease | - |
| NDQ80_RS02525 (NDQ80_02530) | - | 473748..473876 (-) | 129 | WP_012503747.1 | hypothetical protein | - |
| NDQ80_RS02530 (NDQ80_02535) | - | 473998..474405 (+) | 408 | WP_003691430.1 | hypothetical protein | - |
| NDQ80_RS02535 (NDQ80_02540) | - | 474496..475656 (+) | 1161 | WP_003691428.1 | type I restriction endonuclease | - |
| NDQ80_RS02540 (NDQ80_02545) | - | 475938..476807 (+) | 870 | WP_003700071.1 | BRO family protein | - |
| NDQ80_RS02545 (NDQ80_02550) | - | 477100..477549 (+) | 450 | WP_003689093.1 | hypothetical protein | - |
| NDQ80_RS02550 (NDQ80_02555) | terL | 477611..479032 (+) | 1422 | WP_003697216.1 | phage terminase large subunit | - |
| NDQ80_RS02555 (NDQ80_02560) | - | 479029..481176 (+) | 2148 | WP_003691423.1 | phage portal protein | - |
| NDQ80_RS02560 (NDQ80_02565) | - | 481244..482401 (+) | 1158 | WP_260244383.1 | caudovirus prohead protease | - |
| NDQ80_RS02565 (NDQ80_02570) | - | 482442..483941 (+) | 1500 | WP_003691419.1 | hypothetical protein | - |
| NDQ80_RS02570 (NDQ80_02575) | - | 483948..484310 (+) | 363 | WP_003689082.1 | hypothetical protein | - |
| NDQ80_RS02575 (NDQ80_02580) | - | 484313..484843 (+) | 531 | WP_003689080.1 | head-tail connector protein | - |
| NDQ80_RS02580 (NDQ80_02585) | - | 484843..485325 (+) | 483 | WP_003706029.1 | HK97 gp10 family phage protein | - |
| NDQ80_RS02585 (NDQ80_02590) | - | 485322..485750 (+) | 429 | WP_003697213.1 | hypothetical protein | - |
| NDQ80_RS02590 (NDQ80_02595) | - | 485776..486549 (+) | 774 | WP_003691416.1 | hypothetical protein | - |
| NDQ80_RS02595 (NDQ80_02600) | - | 486610..486939 (+) | 330 | WP_003689072.1 | hypothetical protein | - |
| NDQ80_RS02600 (NDQ80_02605) | - | 486951..487217 (+) | 267 | WP_003689070.1 | hypothetical protein | - |
| NDQ80_RS02605 (NDQ80_02610) | - | 487217..487816 (+) | 600 | WP_003692874.1 | DUF2460 domain-containing protein | - |
| NDQ80_RS02610 (NDQ80_02615) | - | 487813..488667 (+) | 855 | WP_010357642.1 | DUF2163 domain-containing protein | - |
| NDQ80_RS02615 (NDQ80_02620) | - | 488669..489100 (+) | 432 | WP_003689064.1 | NlpC/P60 family protein | - |
| NDQ80_RS02620 (NDQ80_02625) | - | 489128..489406 (-) | 279 | WP_003692877.1 | helix-turn-helix domain-containing protein | - |
| NDQ80_RS02625 (NDQ80_02630) | - | 489646..493791 (+) | 4146 | WP_146714070.1 | phage tail protein | - |
| NDQ80_RS02630 (NDQ80_02635) | - | 493903..494208 (+) | 306 | WP_047917725.1 | hypothetical protein | - |
| NDQ80_RS02635 (NDQ80_02640) | - | 494279..494749 (+) | 471 | WP_003691410.1 | hypothetical protein | - |
| NDQ80_RS02640 (NDQ80_02645) | - | 494750..495082 (+) | 333 | WP_003691408.1 | hypothetical protein | - |
| NDQ80_RS02645 (NDQ80_02655) | - | 495436..495783 (-) | 348 | WP_003689051.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| NDQ80_RS02650 (NDQ80_02660) | - | 495783..496019 (-) | 237 | WP_003689049.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| NDQ80_RS02655 (NDQ80_02665) | - | 496059..496184 (+) | 126 | WP_255294325.1 | hypothetical protein | - |
| NDQ80_RS02660 (NDQ80_02670) | - | 496226..496765 (+) | 540 | WP_260244384.1 | TIGR02594 family protein | - |
| NDQ80_RS02665 (NDQ80_02675) | - | 496765..496923 (+) | 159 | WP_003691816.1 | hypothetical protein | - |
| NDQ80_RS02670 (NDQ80_02680) | - | 496907..497248 (+) | 342 | WP_003696082.1 | hypothetical protein | - |
| NDQ80_RS02675 (NDQ80_02685) | - | 497232..497405 (+) | 174 | WP_017146757.1 | hypothetical protein | - |
| NDQ80_RS02680 (NDQ80_02690) | - | 497717..497866 (+) | 150 | WP_003691402.1 | hypothetical protein | - |
| NDQ80_RS02685 (NDQ80_02695) | - | 497896..500943 (+) | 3048 | WP_260244385.1 | tape measure protein | - |
| NDQ80_RS02690 (NDQ80_02700) | - | 501003..501482 (-) | 480 | WP_002241413.1 | DUF4760 domain-containing protein | - |
| NDQ80_RS02695 (NDQ80_02705) | - | 501824..502813 (-) | 990 | WP_003689040.1 | site-specific integrase | - |
| NDQ80_RS02700 (NDQ80_02710) | - | 503073..503261 (-) | 189 | WP_003689039.1 | hypothetical protein | - |
| NDQ80_RS02705 (NDQ80_02715) | purM | 503502..504536 (+) | 1035 | WP_003692893.1 | phosphoribosylformylglycinamidine cyclo-ligase | - |
Sequence
Protein
Download Length: 157 a.a. Molecular weight: 17429.25 Da Isoelectric Point: 9.7225
>NTDB_id=735810 NDQ80_RS02355 WP_172760650.1 454162..454635(+) (pilL) [Neisseria gonorrhoeae strain 10529]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPLDDNQTIKTKLEIFVSGYKM
NPKIAKKYSVSVAFANTEKPRVYRLVGVPKAGTGYTLSVWMNSVGDGYKCRDAASAQAYSETLSANTGCEAFSNRKK
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPLDDNQTIKTKLEIFVSGYKM
NPKIAKKYSVSVAFANTEKPRVYRLVGVPKAGTGYTLSVWMNSVGDGYKCRDAASAQAYSETLSANTGCEAFSNRKK
Nucleotide
Download Length: 474 bp
>NTDB_id=735810 NDQ80_RS02355 WP_172760650.1 454162..454635(+) (pilL) [Neisseria gonorrhoeae strain 10529]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCGCGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCTGGACGATAATCAGACCATCAAGACCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTGGCATTTGCCAATACGGAAAAACCAAGGGTATACAGGTTGGTCGG
CGTTCCGAAGGCAGGGACGGGTTATACCTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCTGCCCAGGCCTATTCGGAGACCTTGTCCGCAAATACCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCGCGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCTGGACGATAATCAGACCATCAAGACCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTGGCATTTGCCAATACGGAAAAACCAAGGGTATACAGGTTGGTCGG
CGTTCCGAAGGCAGGGACGGGTTATACCTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCTGCCCAGGCCTATTCGGAGACCTTGTCCGCAAATACCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilL | Neisseria gonorrhoeae MS11 |
91.083 |
100 |
0.911 |
| pilX | Neisseria meningitidis 8013 |
88.535 |
100 |
0.885 |