Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   LLE39_RS11085 Genome accession   NZ_CP106819
Coordinates   2101430..2101843 (-) Length   137 a.a.
NCBI ID   WP_229930217.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10791     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2096430..2106843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE39_RS11055 (LLE39_11055) pilA 2097337..2098590 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  LLE39_RS11060 (LLE39_11060) - 2098723..2098881 (+) 159 WP_154236104.1 hypothetical protein -
  LLE39_RS11065 (LLE39_11065) - 2098855..2099563 (-) 709 Protein_2131 opacity family porin -
  LLE39_RS11070 (LLE39_11070) - 2099548..2099808 (-) 261 WP_263071302.1 hypothetical protein -
  LLE39_RS11075 (LLE39_11075) - 2100107..2100448 (-) 342 Protein_2133 pilin -
  LLE39_RS11080 (LLE39_11080) - 2100489..2100893 (-) 405 Protein_2134 pilin -
  LLE39_RS11085 (LLE39_11085) pilE 2101430..2101843 (-) 414 WP_229930217.1 pilin Machinery gene
  LLE39_RS11090 (LLE39_11090) lpxC 2101949..2102872 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  LLE39_RS11100 (LLE39_11100) - 2103364..2103720 (-) 357 Protein_2137 pilin -
  LLE39_RS11105 (LLE39_11105) - 2103761..2103976 (-) 216 Protein_2138 pilin -
  LLE39_RS11110 (LLE39_11110) - 2104349..2104480 (-) 132 WP_010356054.1 hypothetical protein -
  LLE39_RS11115 (LLE39_11115) - 2104562..2105250 (-) 689 Protein_2140 SprT family zinc-dependent metalloprotease -
  LLE39_RS11120 (LLE39_11120) - 2105247..2105990 (-) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  LLE39_RS11125 (LLE39_11125) gmhB 2106020..2106583 (-) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 14929.77 Da        Isoelectric Point: 8.4809

>NTDB_id=735791 LLE39_RS11085 WP_229930217.1 2101430..2101843(-) (pilE) [Neisseria gonorrhoeae strain 10791]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNHGKWPEDNDKAGVASPDKIIGKYVKQVEVKNGVVTAEMASTGVNKEIQ
GKKLSLWARRQAGSVKWFCGQPVKRAAKDNDTVANDATNAIETKHLPSTCRDPFSAS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=735791 LLE39_RS11085 WP_229930217.1 2101430..2101843(-) (pilE) [Neisseria gonorrhoeae strain 10791]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATCACGGCAAATGGCCGGAAGACAACGACAAGGCCGGCGTGGCATCCCCCGACAAAATCATAGGCA
AATATGTTAAGCAAGTTGAAGTCAAAAACGGCGTCGTCACCGCCGAAATGGCTTCAACCGGCGTAAACAAAGAAATCCAA
GGCAAAAAACTCTCCCTGTGGGCCAGGCGTCAAGCCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCGCCGC
CAAAGACAACGACACCGTTGCCAACGACGCCACCAACGCCATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGACCCGT
TCTCTGCTAGCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

71.223

100

0.723
  pilE Neisseria gonorrhoeae strain FA1090

71.739

100

0.723