Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   LLE36_RS10980 Genome accession   NZ_CP106817
Coordinates   2081381..2081713 (-) Length   110 a.a.
NCBI ID   WP_396890601.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10574     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2076381..2086713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE36_RS10955 (LLE36_10955) thiC 2076898..2078799 (+) 1902 WP_003686973.1 phosphomethylpyrimidine synthase ThiC -
  LLE36_RS10960 (LLE36_10960) - 2079310..2079668 (-) 359 Protein_2113 pilin -
  LLE36_RS10965 (LLE36_10965) - 2079708..2080061 (-) 354 Protein_2114 pilin -
  LLE36_RS10970 (LLE36_10970) - 2080088..2080447 (-) 360 Protein_2115 pilin -
  LLE36_RS10975 (LLE36_10975) - 2080487..2080891 (-) 405 Protein_2116 pilin -
  LLE36_RS10980 (LLE36_10980) pilE 2081381..2081713 (-) 333 WP_396890601.1 pilin Machinery gene
  LLE36_RS10985 (LLE36_10985) - 2081794..2082168 (-) 375 Protein_2118 pilin -
  LLE36_RS10990 (LLE36_10990) - 2082646..2083005 (-) 360 Protein_2119 pilin -
  LLE36_RS10995 (LLE36_10995) - 2083046..2083363 (-) 318 Protein_2120 pilin -
  LLE36_RS11000 (LLE36_11000) - 2083367..2083675 (+) 309 Protein_2121 NAD(P)-dependent oxidoreductase -
  LLE36_RS11005 (LLE36_11005) metG 2083750..2085804 (-) 2055 WP_003699323.1 methionine--tRNA ligase -

Sequence

Protein


Download         Length: 110 a.a.        Molecular weight: 11947.66 Da        Isoelectric Point: 10.3715

>NTDB_id=735742 LLE36_RS10980 WP_396890601.1 2081381..2081713(-) (pilE) [Neisseria gonorrhoeae strain 10574]
MAGKQHFCRRGIPPDKIKGKYVKEVEVKNGVVTAKMKSDGVNKEIQGKRLSLWAKRENGSVKWFCGQPVTRADDAVKAGT
DAVTADTTGKDKIETKHLPSTCRDTSSAGT

Nucleotide


Download         Length: 333 bp        

>NTDB_id=735742 LLE36_RS10980 WP_396890601.1 2081381..2081713(-) (pilE) [Neisseria gonorrhoeae strain 10574]
ATGGCCGGAAAACAACACTTCTGCCGGCGTGGCATCCCCCCCGACAAAATCAAAGGCAAATATGTTAAAGAGGTTGAAGT
TAAAAACGGCGTCGTCACCGCCAAAATGAAATCAGACGGCGTAAACAAAGAAATCCAAGGCAAAAGACTCTCCCTGTGGG
CCAAGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCGCCGACGACGCCGTCAAAGCCGGCACC
GACGCCGTCACCGCCGACACCACCGGCAAAGACAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATACGTCATC
TGCCGGTACGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(15-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

71.579

86.364

0.618
  pilE Neisseria gonorrhoeae strain FA1090

56.522

100

0.591