Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   OCL41_RS12110 Genome accession   NZ_CP106815
Coordinates   2109316..2109528 (-) Length   70 a.a.
NCBI ID   WP_405083700.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10562     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2104316..2114528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCL41_RS11105 (OCL41_11105) msrAB 2104722..2106290 (-) 1569 WP_003694393.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  OCL41_RS11110 (OCL41_11110) pilA 2106436..2107689 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  OCL41_RS11115 (OCL41_11115) - 2108135..2108916 (-) 782 Protein_2148 opacity family porin -
  OCL41_RS12110 pilE 2109316..2109528 (-) 213 WP_405083700.1 pilin Machinery gene
  OCL41_RS12115 pilE 2109525..2109821 (-) 297 WP_405083701.1 pilin Machinery gene
  OCL41_RS11125 (OCL41_11125) - 2110437..2110517 (-) 81 Protein_2151 pilin -
  OCL41_RS11130 (OCL41_11130) - 2110635..2111039 (-) 405 Protein_2152 pilin -
  OCL41_RS11135 (OCL41_11135) - 2111566..2111979 (-) 414 Protein_2153 pilin -
  OCL41_RS11140 (OCL41_11140) lpxC 2112079..2113002 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  OCL41_RS11970 - 2113494..2114216 (-) 723 WP_374110874.1 pilin -
  OCL41_RS11160 (OCL41_11160) - 2114242..2114457 (-) 216 Protein_2156 pilin -

Sequence

Protein


Download         Length: 70 a.a.        Molecular weight: 7823.83 Da        Isoelectric Point: 9.3103

>NTDB_id=735697 OCL41_RS12110 WP_405083700.1 2109316..2109528(-) (pilE) [Neisseria gonorrhoeae strain 10562]
MKSDGVNKEIQGKRLSLWAKRENGSVKWFCGQPVTRDKAVTDDAVKDVTGNDKIETKHLPSTCRDTSMTN

Nucleotide


Download         Length: 213 bp        

>NTDB_id=735697 OCL41_RS12110 WP_405083700.1 2109316..2109528(-) (pilE) [Neisseria gonorrhoeae strain 10562]
ATGAAATCAGACGGCGTAAACAAAGAAATCCAAGGCAAAAGACTCTCCCTGTGGGCCAAGCGTGAAAACGGTTCGGTAAA
ATGGTTCTGCGGACAGCCGGTTACGCGCGACAAAGCCGTCACCGACGACGCCGTCAAAGACGTCACCGGCAACGACAAAA
TCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATACGTCAATGACAAATTAG

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(1-64)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

70.149

95.714

0.671
  pilE Neisseria gonorrhoeae MS11

67.692

92.857

0.629