Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   OCL41_RS10220 Genome accession   NZ_CP106815
Coordinates   1942824..1943186 (-) Length   120 a.a.
NCBI ID   WP_162098120.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10562     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1937824..1948186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCL41_RS10200 (OCL41_10200) rfbC 1937901..1938458 (+) 558 WP_003690171.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  OCL41_RS10205 (OCL41_10205) - 1938502..1940520 (-) 2019 WP_003690172.1 OPT family oligopeptide transporter -
  OCL41_RS10210 (OCL41_10210) dnaJ 1940715..1941836 (-) 1122 WP_003690173.1 molecular chaperone DnaJ -
  OCL41_RS10215 (OCL41_10215) - 1941970..1942299 (+) 330 Protein_1977 transposase -
  OCL41_RS10220 (OCL41_10220) comE 1942824..1943186 (-) 363 WP_162098120.1 helix-hairpin-helix domain-containing protein Machinery gene
  OCL41_RS10225 (OCL41_10225) - 1943319..1943434 (-) 116 Protein_1979 competence protein ComE -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 12590.24 Da        Isoelectric Point: 10.7586

>NTDB_id=735689 OCL41_RS10220 WP_162098120.1 1942824..1943186(-) (comE) [Neisseria gonorrhoeae strain 10562]
MLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVD
DLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 363 bp        

>NTDB_id=735689 OCL41_RS10220 WP_162098120.1 1942824..1943186(-) (comE) [Neisseria gonorrhoeae strain 10562]
TTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAACCCTTAAAGGAAAAACCATGAAAAAAATGTTTGT
ATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCGGCTTCGCAGCAGGAGCTGGAGG
CGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATACCGCGCGCAAAACGGCGCGTTCAAGTCTGTGGAC
GATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCTGAAAGACCAGGCTTCCGTCGGCGCGCCCGCACC
AAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(41-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

99.167

100

0.992
  comE Neisseria gonorrhoeae MS11

99.167

100

0.992
  comE Neisseria gonorrhoeae MS11

99.167

100

0.992
  comE Neisseria gonorrhoeae MS11

99.167

100

0.992