Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   FNL83_RS00185 Genome accession   NZ_AP019721
Coordinates   37668..39296 (-) Length   542 a.a.
NCBI ID   WP_001631035.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain NBRC 100911     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
SCCmec 37668..56519 37668..39296 within 0


Gene organization within MGE regions


Location: 37668..56519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNL83_RS00185 (Sep02g_00320) ccrB 37668..39296 (-) 1629 WP_001631035.1 cassette chromosome recombinase CcrB Machinery gene
  FNL83_RS00190 (Sep02g_00330) ccrA 39293..40654 (-) 1362 WP_001631036.1 cassette chromosome recombinase CcrA Machinery gene
  FNL83_RS00195 (Sep02g_00340) - 40841..41470 (-) 630 Protein_34 hypothetical protein -
  FNL83_RS11975 (Sep02g_00350) - 41479..41817 (+) 339 Protein_35 recombinase family protein -
  FNL83_RS00205 (Sep02g_00370) - 41929..42288 (-) 360 WP_001631039.1 hypothetical protein -
  FNL83_RS00210 (Sep02g_00380) - 42495..42821 (+) 327 WP_000391495.1 ArsR/SmtB family transcription factor -
  FNL83_RS00220 (Sep02g_00390) - 43151..45076 (+) 1926 WP_002485723.1 heavy metal translocating P-type ATPase -
  FNL83_RS00225 - 46244..47149 (-) 906 Protein_39 transposase -
  FNL83_RS00230 (Sep02g_00400) - 47270..47839 (+) 570 WP_002470562.1 hypothetical protein -
  FNL83_RS00235 (Sep02g_00410) - 47884..49041 (+) 1158 WP_002485721.1 hypothetical protein -
  FNL83_RS00240 (Sep02g_00420) - 49224..49496 (+) 273 WP_002501902.1 hypothetical protein -
  FNL83_RS00245 (Sep02g_00430) - 49526..50200 (+) 675 WP_134943505.1 IS6-like element IS257 family transposase -
  FNL83_RS00250 (Sep02g_00440) lspA 50228..50680 (-) 453 WP_164071529.1 signal peptidase II -
  FNL83_RS00255 (Sep02g_00450) - 50840..51241 (+) 402 WP_057504659.1 ArsR/SmtB family transcription factor -
  FNL83_RS00260 (Sep02g_00460) - 51495..52262 (+) 768 WP_057504658.1 ZIP family metal transporter -
  FNL83_RS00265 (Sep02g_00480) - 52519..54927 (+) 2409 WP_002485759.1 heavy metal translocating P-type ATPase -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62474.71 Da        Isoelectric Point: 9.6103

>NTDB_id=73565 FNL83_RS00185 WP_001631035.1 37668..39296(-) (ccrB) [Staphylococcus epidermidis strain NBRC 100911]
MKQLKKKRIGLYARVSTEMQTDGYSIQGQLNQLTEYCQFQGYEVVNEYTDRGISGKTMQRPELQRMLKDANEGKLDCIMV
YKTNRLARNTSDLLNIVEELYKINVEFFSLTEKIEIASSTGKLMLQILASFAEFERNTIVENVYNGQRQRAIEGYYQGNL
PLGYDKVPDSKKELMINQHEANIVKYIFDSYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYIISNPFYIGKIQFAKY
RHWSDKRRKGLNEEPIIADGKHAPIIDRNLWDKVQFKRQESRKKPQVHGKGTNLLTGIVKCPKCGAAMAASNTTNTLKDG
TKKRIRYYSCSNFRNKGSKVCSANSVRADVLEKYVMDQILEIIKSKKVLKQLVEKVNEKSQIDVSSLNHDIAYKQSQCEE
IKAKMHTLTKTIEDSPDLDSVLKPTILSYQDELNQINNQIYQLEQDKQAEAPHYDADMIANVLQAIFKDIDKLEKSQLKS
LYLTIIDRIDIRKDEHHKKQFYVTLKLNNDIIKQLFNNHPLDEVLPSTSSLFLPQTLYITIE

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=73565 FNL83_RS00185 WP_001631035.1 37668..39296(-) (ccrB) [Staphylococcus epidermidis strain NBRC 100911]
ATGAAACAACTCAAAAAGAAACGTATTGGATTATATGCACGTGTATCGACTGAAATGCAAACGGATGGTTACAGTATTCA
AGGTCAATTGAATCAACTTACAGAGTATTGTCAATTTCAAGGCTATGAAGTCGTCAATGAATACACCGATCGTGGTATAT
CAGGTAAAACAATGCAACGTCCAGAATTACAACGTATGTTAAAAGATGCCAACGAAGGTAAATTAGATTGTATTATGGTC
TACAAAACAAATCGTTTAGCTAGAAATACCTCAGATTTGTTAAATATTGTCGAGGAATTGTATAAGATTAATGTCGAATT
TTTTAGTCTAACTGAAAAAATAGAAATTGCCAGTTCAACAGGTAAATTGATGCTCCAAATTTTAGCCAGCTTCGCAGAAT
TTGAACGTAATACGATTGTAGAGAATGTCTACAATGGCCAAAGACAACGTGCTATTGAAGGTTATTATCAAGGTAATTTA
CCTCTAGGCTACGATAAAGTACCTGACAGTAAAAAAGAGCTCATGATCAATCAACATGAAGCGAATATTGTTAAATATAT
TTTTGATTCATACGCTAAAGGTCATGGTTATCGTAAGATTGCGAACGCATTGAATCATAAAGGTTATGTGACTAAGAAAG
GGAAACCTTTTAGTATTTCGTCCATTACCTACATCATCTCAAACCCTTTTTACATTGGAAAGATACAGTTTGCGAAGTAT
AGACACTGGAGCGATAAAAGACGAAAAGGACTCAATGAGGAACCGATTATCGCTGATGGTAAACATGCGCCTATTATTGA
TAGAAACCTATGGGATAAAGTACAGTTTAAACGTCAAGAGAGTCGCAAGAAACCACAAGTTCACGGCAAAGGAACAAACC
TACTGACTGGGATTGTAAAATGTCCGAAATGTGGTGCAGCAATGGCGGCAAGTAATACAACTAATACATTAAAAGATGGC
ACTAAGAAAAGAATCAGATATTACTCATGTAGCAATTTTAGAAATAAAGGTTCAAAAGTTTGTTCTGCCAATAGCGTTAG
AGCAGATGTACTAGAAAAATATGTTATGGATCAGATATTGGAAATTATCAAAAGCAAAAAGGTATTGAAGCAATTGGTTG
AAAAGGTAAATGAAAAAAGTCAAATAGACGTCTCTTCTTTGAACCATGATATTGCCTATAAACAGTCACAATGTGAAGAA
ATAAAAGCAAAAATGCATACATTAACGAAAACTATTGAAGACTCACCTGACTTAGATAGCGTATTAAAACCAACAATACT
TAGCTACCAAGATGAATTGAATCAAATAAATAATCAAATCTATCAACTAGAACAAGATAAACAAGCAGAAGCTCCACATT
ATGATGCTGATATGATTGCGAATGTACTACAAGCAATATTCAAAGATATAGACAAATTAGAGAAATCTCAGTTGAAATCA
CTATATCTAACAATCATCGATCGCATTGACATAAGAAAAGATGAGCATCATAAGAAGCAATTTTATGTTACGCTCAAGTT
AAATAATGATATAATCAAACAACTATTTAATAACCATCCACTCGACGAAGTGCTCCCTAGCACTTCGTCTTTATTTTTGC
CACAAACTTTATATATAACTATTGAATAA

Domains

Predicted by InterproScan.

Ogr/Delta-like zinc finger (Ogr_Delta)

(300-355)

Resolvase, N terminal domain (Resolvase)

(11-154)

Recombinase (Recombinase)

(179-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

72.694

100

0.727

Multiple sequence alignment