Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OCL46_RS11890 Genome accession   NZ_CP106811
Coordinates   1956878..1957000 (-) Length   40 a.a.
NCBI ID   WP_317629298.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10531     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1951878..1962000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCL46_RS10245 (OCL46_10245) - 1952722..1953006 (-) 285 WP_003692093.1 GIY-YIG nuclease family protein -
  OCL46_RS10250 (OCL46_10250) pilC 1953913..1956750 (-) 2838 WP_317629302.1 PilC family type IV pilus tip adhesin Machinery gene
  OCL46_RS11890 pilC 1956878..1957000 (-) 123 WP_317629298.1 hypothetical protein Machinery gene
  OCL46_RS10255 (OCL46_10255) - 1957687..1957950 (+) 264 WP_229433460.1 hypothetical protein -
  OCL46_RS10260 (OCL46_10260) gnd 1958030..1959478 (+) 1449 WP_003688061.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -
  OCL46_RS10265 (OCL46_10265) waaA 1959541..1960812 (+) 1272 WP_010360974.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  OCL46_RS10270 (OCL46_10270) - 1960853..1961302 (+) 450 WP_229930593.1 CopD family copper resistance protein -

Sequence

Protein


Download         Length: 40 a.a.        Molecular weight: 4769.71 Da        Isoelectric Point: 12.9831

>NTDB_id=735603 OCL46_RS11890 WP_317629298.1 1956878..1957000(-) (pilC) [Neisseria gonorrhoeae strain 10531]
MNKTLKRQVFRHTALYAAILMFSHTGGRGRRRRKRINTLL

Nucleotide


Download         Length: 123 bp        

>NTDB_id=735603 OCL46_RS11890 WP_317629298.1 1956878..1957000(-) (pilC) [Neisseria gonorrhoeae strain 10531]
ATGAATAAAACTTTGAAACGGCAGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GCGGGGCAGGCGCAGGCGCAAACGTATAAATACGCTATTGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

96.552

72.5

0.7