Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   OCL46_RS11085 Genome accession   NZ_CP106811
Coordinates   2104754..2105167 (-) Length   137 a.a.
NCBI ID   WP_229930599.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10531     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2099754..2110167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCL46_RS11065 (OCL46_11065) pilA 2100901..2102154 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  OCL46_RS11070 (OCL46_11070) - 2102425..2103138 (-) 714 WP_229930597.1 opacity family porin -
  OCL46_RS11075 (OCL46_11075) - 2103710..2103940 (-) 231 Protein_2134 pilin -
  OCL46_RS11085 (OCL46_11085) pilE 2104754..2105167 (-) 414 WP_229930599.1 pilin Machinery gene
  OCL46_RS11090 (OCL46_11090) lpxC 2105273..2106196 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  OCL46_RS11900 - 2106688..2107416 (-) 729 WP_396888834.1 pilin -
  OCL46_RS11110 (OCL46_11110) - 2107442..2107657 (-) 216 Protein_2138 pilin -
  OCL46_RS11115 (OCL46_11115) - 2108030..2108161 (-) 132 WP_010356054.1 hypothetical protein -
  OCL46_RS11120 (OCL46_11120) - 2108243..2108931 (-) 689 Protein_2140 SprT family zinc-dependent metalloprotease -
  OCL46_RS11125 (OCL46_11125) - 2108928..2109671 (-) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 14989.78 Da        Isoelectric Point: 7.1351

>NTDB_id=735599 OCL46_RS11085 WP_229930599.1 2104754..2105167(-) (pilE) [Neisseria gonorrhoeae strain 10531]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNHGKWPEDNDKAGVASPDKIIGKYVKQVEVKNGVVTAEMASTGVNKEIQ
GKKLSLWAKRQDGSVKWFCGQPVKRNAKDNDTVADDATNAIETKHLPSTCRDPFSAS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=735599 OCL46_RS11085 WP_229930599.1 2104754..2105167(-) (pilE) [Neisseria gonorrhoeae strain 10531]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATCACGGCAAATGGCCGGAAGACAACGACAAGGCCGGCGTGGCATCCCCCGACAAAATCATAGGCA
AATATGTTAAGCAAGTTGAAGTCAAAAACGGCGTCGTCACCGCCGAAATGGCTTCAACCGGCGTAAACAAAGAAATCCAA
GGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCAACGC
CAAAGACAACGACACCGTTGCCGACGACGCCACCAACGCCATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGACCCGT
TCTCTGCTAGCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

73.188

100

0.737
  pilE Neisseria gonorrhoeae MS11

69.565

100

0.701