Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   P5670_RS21460 Genome accession   NZ_CP121087
Coordinates   4402618..4403355 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain ST3     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4397618..4408355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5670_RS21430 (P5670_21430) yfiL 4397777..4398142 (-) 366 WP_001296308.1 DUF2799 domain-containing protein -
  P5670_RS21435 (P5670_21435) aroF 4398351..4399421 (+) 1071 WP_001168043.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  P5670_RS21440 (P5670_21440) tyrA 4399432..4400553 (+) 1122 WP_000225233.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  P5670_RS21445 (P5670_21445) pheA 4400596..4401756 (-) 1161 WP_000200119.1 bifunctional chorismate mutase/prephenate dehydratase -
  P5670_RS21450 (P5670_21450) pheL 4401855..4401902 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  P5670_RS21455 (P5670_21455) raiA 4402006..4402347 (-) 342 WP_000178463.1 ribosome-associated translation inhibitor RaiA -
  P5670_RS21460 (P5670_21460) comL 4402618..4403355 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  P5670_RS21465 (P5670_21465) rluD 4403490..4404470 (+) 981 WP_000079106.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  P5670_RS21470 (P5670_21470) yfiH 4404467..4405198 (+) 732 WP_000040163.1 purine nucleoside phosphorylase YfiH -
  P5670_RS21475 (P5670_21475) clpC 4405328..4407901 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=735585 P5670_RS21460 WP_000197686.1 4402618..4403355(-) (comL) [Escherichia coli strain ST3]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=735585 P5670_RS21460 WP_000197686.1 4402618..4403355(-) (comL) [Escherichia coli strain ST3]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAACCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376