Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OCL44_RS00300 Genome accession   NZ_CP106809
Coordinates   55060..55650 (-) Length   196 a.a.
NCBI ID   WP_263071607.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10708     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 50060..60650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCL44_RS00275 (OCL44_00275) pilC 52861..53079 (-) 219 WP_263071598.1 hypothetical protein Machinery gene
  OCL44_RS12030 pilC 53164..54658 (-) 1495 Protein_51 PilC family type IV pilus tip adhesin -
  OCL44_RS00295 (OCL44_00295) - 54579..54917 (-) 339 WP_263071605.1 hypothetical protein -
  OCL44_RS00300 (OCL44_00300) pilC 55060..55650 (-) 591 WP_263071607.1 hypothetical protein Machinery gene
  OCL44_RS00305 (OCL44_00305) apbC 57274..58353 (-) 1080 WP_260236848.1 iron-sulfur cluster carrier protein ApbC -
  OCL44_RS00315 (OCL44_00315) - 58727..59236 (+) 510 WP_003687293.1 protein disulfide oxidoreductase -
  OCL44_RS00320 (OCL44_00320) nadR 59577..60017 (+) 441 WP_003687296.1 MarR family adhesin repressor NadR -
  OCL44_RS00325 (OCL44_00325) hpaC 60132..60632 (+) 501 WP_003687298.1 4-hydroxyphenylacetate 3-monooxygenase, reductase component -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22329.02 Da        Isoelectric Point: 10.3534

>NTDB_id=735505 OCL44_RS00300 WP_263071607.1 55060..55650(-) (pilC) [Neisseria gonorrhoeae strain 10708]
MAQTRNYAIVMNAQNQPEVKWDRQYQKSQLREKDRERKFIYTNQKNWSGQQNNFISFDNTDTLVSRQSGTAVFGTATYLP
PYGKVSGFDTAELNKRGNAVNWIHTTRAGLAGYVYTGIHCGSTSGCPELVYKTRFSFGNTGLATNAGKLNRHTEPSRENS
PIYKLKDHPWLGVSFQFGQRGTAKRWQIIQQIGIFF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=735505 OCL44_RS00300 WP_263071607.1 55060..55650(-) (pilC) [Neisseria gonorrhoeae strain 10708]
ATGGCGCAAACCCGTAACTACGCTATTGTCATGAACGCGCAAAACCAGCCGGAGGTAAAGTGGGATAGGCAATATCAAAA
ATCACAATTAAGGGAAAAAGACAGGGAACGCAAATTTATCTATACGAACCAGAAAAACTGGTCGGGCCAACAAAACAATT
TTATCTCATTCGACAATACCGATACCCTTGTTTCCCGACAAAGCGGTACTGCCGTTTTTGGCACAGCCACCTACCTGCCG
CCCTACGGCAAGGTTTCCGGCTTTGATACCGCCGAGCTGAACAAGCGCGGCAATGCCGTCAATTGGATTCATACCACCCG
GGCCGGGCTGGCAGGCTACGTCTACACCGGTATCCATTGCGGAAGTACCTCAGGCTGTCCCGAACTTGTCTATAAAACCC
GATTTTCCTTCGGCAACACCGGTTTGGCAACAAATGCGGGCAAGCTGAATAGGCACACAGAGCCAAGCCGCGAAAATTCG
CCCATTTACAAATTGAAAGATCATCCATGGTTGGGCGTGTCTTTTCAATTTGGGCAGCGAGGGACCGCCAAAAGATGGCA
GATCATCCAACAAATTGGTATCTTCTTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

65.761

93.878

0.617