Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OCL44_RS00275 Genome accession   NZ_CP106809
Coordinates   52861..53079 (-) Length   72 a.a.
NCBI ID   WP_263071598.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10708     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 47861..58079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCL44_RS00255 (OCL44_00255) - 48831..49220 (-) 390 WP_003687278.1 endonuclease domain-containing protein -
  OCL44_RS00265 (OCL44_00265) - 49383..49762 (-) 380 Protein_48 VOC family protein -
  OCL44_RS00270 (OCL44_00270) carA 49816..50949 (-) 1134 WP_025455926.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -
  OCL44_RS00275 (OCL44_00275) pilC 52861..53079 (-) 219 WP_263071598.1 hypothetical protein Machinery gene
  OCL44_RS12030 pilC 53164..54658 (-) 1495 Protein_51 PilC family type IV pilus tip adhesin -
  OCL44_RS00295 (OCL44_00295) - 54579..54917 (-) 339 WP_263071605.1 hypothetical protein -
  OCL44_RS00300 (OCL44_00300) pilC 55060..55650 (-) 591 WP_263071607.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 72 a.a.        Molecular weight: 7958.04 Da        Isoelectric Point: 11.3733

>NTDB_id=735504 OCL44_RS00275 WP_263071598.1 52861..53079(-) (pilC) [Neisseria gonorrhoeae strain 10708]
MRTAFVTIRSYTGNDKCGAQTAILGINTADGGALTPRSARPIVPDHNSVAQYSGVRNLQRQIHPYRLYGKRR

Nucleotide


Download         Length: 219 bp        

>NTDB_id=735504 OCL44_RS00275 WP_263071598.1 52861..53079(-) (pilC) [Neisseria gonorrhoeae strain 10708]
TTGCGTACCGCCTTTGTCACCATCCGCAGCTATACGGGTAATGACAAATGCGGCGCGCAAACCGCCATTTTGGGCATCAA
TACCGCCGACGGCGGCGCATTGACTCCGAGAAGCGCGCGCCCGATTGTGCCGGATCACAATTCGGTTGCGCAATATTCCG
GCGTAAGAAACCTCCAAAGGCAAATCCATCCCTATAGGTTGTATGGAAAAAGGCGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

78.182

76.389

0.597