Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD2   Type   Regulator
Locus tag   P6F23_RS09680 Genome accession   NZ_CP120953
Coordinates   1912389..1912688 (-) Length   99 a.a.
NCBI ID   WP_000002567.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain GBSIR0001     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 1907389..1917688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6F23_RS09655 (P6F23_09655) - 1907815..1908306 (-) 492 WP_000632643.1 PTS sugar transporter subunit IIB -
  P6F23_RS09660 (P6F23_09660) - 1908323..1908748 (-) 426 WP_000823120.1 PTS mannose transporter subunit IIA -
  P6F23_RS09665 (P6F23_09665) - 1908995..1910029 (-) 1035 WP_286629672.1 alanine racemase -
  P6F23_RS09670 (P6F23_09670) - 1910258..1911412 (-) 1155 WP_000623419.1 ABC transporter permease subunit -
  P6F23_RS09675 (P6F23_09675) - 1911418..1912266 (-) 849 WP_000926588.1 ABC transporter ATP-binding protein -
  P6F23_RS09680 (P6F23_09680) comD/comD2 1912389..1912688 (-) 300 WP_000002567.1 GHKL domain-containing protein Regulator
  P6F23_RS09685 (P6F23_09685) comE/blpR 1912757..1913509 (-) 753 WP_001019932.1 response regulator transcription factor Regulator
  P6F23_RS09690 (P6F23_09690) - 1913786..1914601 (-) 816 WP_001029868.1 endonuclease/exonuclease/phosphatase family protein -
  P6F23_RS09695 (P6F23_09695) - 1914655..1916838 (-) 2184 WP_000795063.1 PTS transporter subunit IIBC -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11343.79 Da        Isoelectric Point: 5.0958

>NTDB_id=735495 P6F23_RS09680 WP_000002567.1 1912389..1912688(-) (comD/comD2) [Streptococcus agalactiae strain GBSIR0001]
MANMIDYSHHIEVSLETDEPKIAMSYFTLNHKQIFIIENSIVEERIDASRLFGYGASSKGEDRGLGLYNVMKVIDRYPNA
SISTNSEQHTFRQGLEIIF

Nucleotide


Download         Length: 300 bp        

>NTDB_id=735495 P6F23_RS09680 WP_000002567.1 1912389..1912688(-) (comD/comD2) [Streptococcus agalactiae strain GBSIR0001]
TTGGCTAATATGATAGATTATAGCCACCATATTGAAGTTTCTTTAGAGACAGATGAACCTAAGATAGCCATGTCTTATTT
TACATTAAACCATAAGCAAATTTTTATCATAGAAAATTCGATAGTCGAGGAAAGAATAGATGCTTCACGTTTGTTTGGTT
ATGGAGCAAGTAGCAAGGGAGAAGATAGAGGGTTAGGCCTTTATAATGTCATGAAAGTTATTGACCGTTATCCCAATGCA
TCTATTAGTACAAATAGTGAACAACATACTTTCCGTCAGGGCTTAGAAATAATCTTTTAG

Domains

Predicted by InterProScan.

GHKL domain (HATPase_c_5)

(11-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD2 Streptococcus equinus JB1

40.86

93.939

0.384
  comD/comD3 Streptococcus equinus JB1

38.71

93.939

0.364