Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   OCL42_RS09535 Genome accession   NZ_CP106807
Coordinates   1818715..1819167 (+) Length   150 a.a.
NCBI ID   WP_317629449.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10736     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1813715..1824167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCL42_RS09500 (OCL42_09500) metG 1814237..1816291 (+) 2055 WP_260237142.1 methionine--tRNA ligase -
  OCL42_RS09505 (OCL42_09505) - 1816366..1816680 (-) 315 Protein_1842 NAD(P)-dependent oxidoreductase -
  OCL42_RS12125 (OCL42_09510) - 1816678..1816989 (+) 312 Protein_1843 pilin -
  OCL42_RS09520 (OCL42_09520) - 1817198..1817533 (+) 336 Protein_1844 pilin -
  OCL42_RS09525 (OCL42_09525) - 1817533..1817883 (+) 351 Protein_1845 pilin -
  OCL42_RS09530 (OCL42_09530) - 1817865..1818203 (+) 339 Protein_1846 pilin -
  OCL42_RS09535 (OCL42_09535) pilE 1818715..1819167 (+) 453 WP_317629449.1 pilin Machinery gene
  OCL42_RS09540 (OCL42_09540) - 1819177..1819539 (+) 363 Protein_1848 pilin -
  OCL42_RS09545 (OCL42_09545) - 1819579..1819932 (+) 354 Protein_1849 pilin -
  OCL42_RS09550 (OCL42_09550) thiC 1820421..1822322 (-) 1902 WP_197097900.1 phosphomethylpyrimidine synthase ThiC -
  OCL42_RS09560 (OCL42_09560) - 1822920..1823795 (+) 876 WP_003686971.1 NUDIX hydrolase family protein -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 16504.82 Da        Isoelectric Point: 10.3195

>NTDB_id=735495 OCL42_RS09535 WP_317629449.1 1818715..1819167(+) (pilE) [Neisseria gonorrhoeae strain 10736]
MRRQTRIPARAQVSEAILLAEGQKSAITEYYPNHGKWPEDNTSAGVASPAEIKGKYVKSVTVAKGVVTAEMKPSGVNKEI
QGKKLSLWGRRENGSVKWFCGQPVTRGNAKDDTVADDATAGNNKIDTKHLPSTCRDLPRYVICQIRQIRP

Nucleotide


Download         Length: 453 bp        

>NTDB_id=735495 OCL42_RS09535 WP_317629449.1 1818715..1819167(+) (pilE) [Neisseria gonorrhoeae strain 10736]
CTGCGCCGACAGACCCGGATTCCCGCCCGCGCGCAAGTTTCCGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCAT
CACCGAGTATTACCCGAATCACGGCAAATGGCCGGAAGACAACACTTCTGCCGGCGTGGCATCCCCCGCCGAAATCAAAG
GCAAATATGTTAAAAGCGTTACGGTCGCAAAAGGCGTCGTTACCGCCGAAATGAAACCAAGCGGCGTAAACAAAGAAATC
CAAGGCAAAAAACTCTCCCTGTGGGGCAGGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCGG
CAACGCCAAAGACGACACCGTTGCCGACGACGCCACCGCCGGCAACAACAAAATCGACACCAAGCACCTGCCGTCAACCT
GCCGTGACCTGCCGCGATACGTCATCTGCCAAATAAGGCAAATTAGGCCTTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(9-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

79.845

86

0.687
  pilE Neisseria gonorrhoeae strain FA1090

77.344

85.333

0.66