Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   OCL39_RS02120 Genome accession   NZ_CP106805
Coordinates   442997..443392 (+) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10743     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 437997..448392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCL39_RS02115 (OCL39_02115) - 442776..442892 (+) 117 Protein_397 competence protein ComE -
  OCL39_RS02120 (OCL39_02120) comE 442997..443392 (+) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  OCL39_RS02125 (OCL39_02125) comP 443480..443929 (+) 450 WP_002214937.1 type IV pilin protein Machinery gene
  OCL39_RS02130 (OCL39_02130) - 444306..444452 (-) 147 WP_003691757.1 hypothetical protein -
  OCL39_RS02135 (OCL39_02135) - 444881..445429 (+) 549 WP_263863916.1 DNA cytosine methyltransferase -
  OCL39_RS02140 (OCL39_02140) - 445468..445797 (+) 330 WP_002234365.1 DNA cytosine methyltransferase -
  OCL39_RS02145 (OCL39_02145) - 445811..446668 (+) 858 WP_263055855.1 ATP-binding protein -
  OCL39_RS02150 (OCL39_02150) - 446858..447454 (+) 597 WP_012503916.1 TIGR02391 family protein -
  OCL39_RS02155 (OCL39_02155) - 447460..447882 (+) 423 WP_003691751.1 very short patch repair endonuclease -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=735409 OCL39_RS02120 WP_003703428.1 442997..443392(+) (comE) [Neisseria gonorrhoeae strain 10743]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=735409 OCL39_RS02120 WP_003703428.1 442997..443392(+) (comE) [Neisseria gonorrhoeae strain 10743]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1