Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   OCL40_RS09555 Genome accession   NZ_CP106803
Coordinates   1819304..1819756 (+) Length   150 a.a.
NCBI ID   WP_317629393.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10819     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1814304..1824756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCL40_RS09520 (OCL40_09520) metG 1814819..1816873 (+) 2055 WP_260237142.1 methionine--tRNA ligase -
  OCL40_RS09525 (OCL40_09525) - 1816948..1817262 (-) 315 Protein_1840 NAD(P)-dependent oxidoreductase -
  OCL40_RS12130 (OCL40_09530) - 1817260..1817571 (+) 312 Protein_1841 pilin -
  OCL40_RS09540 (OCL40_09540) - 1817780..1818133 (+) 354 Protein_1842 pilin -
  OCL40_RS09545 (OCL40_09545) - 1818115..1818470 (+) 356 Protein_1843 pilin -
  OCL40_RS09550 (OCL40_09550) - 1818452..1818792 (+) 341 Protein_1844 pilin -
  OCL40_RS09555 (OCL40_09555) pilE 1819304..1819756 (+) 453 WP_317629393.1 pilin Machinery gene
  OCL40_RS12000 - 1819757..1820521 (+) 765 WP_317629394.1 pilin -
  OCL40_RS09570 (OCL40_09570) thiC 1821010..1822911 (-) 1902 WP_197097900.1 phosphomethylpyrimidine synthase ThiC -
  OCL40_RS09580 (OCL40_09580) - 1823509..1824384 (+) 876 WP_003686971.1 NUDIX hydrolase family protein -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 16493.79 Da        Isoelectric Point: 10.2225

>NTDB_id=735398 OCL40_RS09555 WP_317629393.1 1819304..1819756(+) (pilE) [Neisseria gonorrhoeae strain 10819]
MRRQTRIPARAQVSEAILLAEGQKSAITEYYLNHGTWPEDNTSAGVASPAEIKGKYVKSVTVAKGVVTAEMKPSGVNKEI
QGKKLSLWGRRENGSVKWFCGQPVTRGNAKDDTVADDATAGNNKIDTKHLPSTCRDLPRYVICQIRQIRP

Nucleotide


Download         Length: 453 bp        

>NTDB_id=735398 OCL40_RS09555 WP_317629393.1 1819304..1819756(+) (pilE) [Neisseria gonorrhoeae strain 10819]
CTGCGCCGACAGACCCGGATTCCCGCCCGCGCGCAAGTTTCCGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCAT
CACCGAGTATTACCTGAATCACGGCACATGGCCGGAAGACAACACTTCTGCCGGCGTGGCATCCCCCGCCGAAATCAAAG
GCAAATATGTTAAAAGCGTTACGGTCGCAAAAGGCGTCGTTACCGCCGAAATGAAACCAAGCGGCGTAAACAAAGAAATC
CAAGGCAAAAAACTCTCCCTGTGGGGCAGGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCGG
CAACGCCAAAGACGACACCGTTGCCGACGACGCCACCGCCGGCAACAACAAAATCGACACCAAGCACCTGCCGTCAACCT
GCCGTGACCTGCCGCGATACGTCATCTGCCAAATAAGGCAAATTAGGCCTTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(9-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

79.845

86

0.687
  pilE Neisseria gonorrhoeae strain FA1090

78.125

85.333

0.667