Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   P7249_RS06070 Genome accession   NZ_CP120944
Coordinates   1213698..1214435 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O157:H7 str. EDL933     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1208698..1219435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7249_RS06040 yfiL 1208856..1209221 (-) 366 WP_001301878.1 DUF2799 domain-containing protein -
  P7249_RS06045 aroF 1209431..1210501 (+) 1071 WP_001168032.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  P7249_RS06050 tyrA 1210512..1211633 (+) 1122 WP_000225204.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  P7249_RS06055 pheA 1211676..1212836 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  P7249_RS06060 pheL 1212935..1212982 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  P7249_RS06065 raiA 1213086..1213427 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  P7249_RS06070 comL 1213698..1214435 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  P7249_RS06075 rluD 1214570..1215550 (+) 981 WP_000079092.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  P7249_RS06080 yfiH 1215547..1216278 (+) 732 WP_000040152.1 purine nucleoside phosphorylase YfiH -
  P7249_RS06085 clpC 1216408..1218981 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=735349 P7249_RS06070 WP_000197686.1 1213698..1214435(-) (comL) [Escherichia coli O157:H7 str. EDL933]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=735349 P7249_RS06070 WP_000197686.1 1213698..1214435(-) (comL) [Escherichia coli O157:H7 str. EDL933]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376