Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | OEJ84_RS13385 | Genome accession | NZ_CP106791 |
| Coordinates | 2552246..2552581 (+) | Length | 111 a.a. |
| NCBI ID | WP_003226345.1 | Uniprot ID | A0AAE2VGU9 |
| Organism | Bacillus subtilis strain 23-1 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2547246..2557581
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OEJ84_RS13365 (OEJ84_13365) | gcvT | 2547838..2548926 (-) | 1089 | WP_004398598.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| OEJ84_RS13370 (OEJ84_13370) | hepAA | 2549368..2551041 (+) | 1674 | WP_004398544.1 | DEAD/DEAH box helicase | - |
| OEJ84_RS13375 (OEJ84_13375) | yqhG | 2551062..2551856 (+) | 795 | WP_003230200.1 | YqhG family protein | - |
| OEJ84_RS13380 (OEJ84_13380) | sinI | 2552039..2552212 (+) | 174 | WP_003230187.1 | anti-repressor SinI | Regulator |
| OEJ84_RS13385 (OEJ84_13385) | sinR | 2552246..2552581 (+) | 336 | WP_003226345.1 | transcriptional regulator SinR | Regulator |
| OEJ84_RS13390 (OEJ84_13390) | tasA | 2552674..2553459 (-) | 786 | WP_004398632.1 | biofilm matrix protein TasA | - |
| OEJ84_RS13395 (OEJ84_13395) | sipW | 2553523..2554095 (-) | 573 | WP_003246088.1 | signal peptidase I SipW | - |
| OEJ84_RS13400 (OEJ84_13400) | tapA | 2554079..2554840 (-) | 762 | WP_004399106.1 | amyloid fiber anchoring/assembly protein TapA | - |
| OEJ84_RS13405 (OEJ84_13405) | yqzG | 2555112..2555438 (+) | 327 | WP_003246051.1 | YqzG/YhdC family protein | - |
| OEJ84_RS13410 (OEJ84_13410) | spoIITA | 2555480..2555659 (-) | 180 | WP_003230176.1 | YqzE family protein | - |
| OEJ84_RS13415 (OEJ84_13415) | comGG | 2555730..2556104 (-) | 375 | WP_003230170.1 | ComG operon protein ComGG | Machinery gene |
| OEJ84_RS13420 (OEJ84_13420) | comGF | 2556105..2556488 (-) | 384 | WP_003230168.1 | ComG operon protein ComGF | Machinery gene |
| OEJ84_RS13425 (OEJ84_13425) | comGE | 2556514..2556861 (-) | 348 | WP_003230165.1 | ComG operon protein 5 | Machinery gene |
| OEJ84_RS13430 (OEJ84_13430) | comGD | 2556845..2557276 (-) | 432 | WP_004398628.1 | comG operon protein ComGD | Machinery gene |
| OEJ84_RS13435 (OEJ84_13435) | comGC | 2557266..2557562 (-) | 297 | WP_003230162.1 | comG operon protein ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12988.64 Da Isoelectric Point: 7.2023
>NTDB_id=735247 OEJ84_RS13385 WP_003226345.1 2552246..2552581(+) (sinR) [Bacillus subtilis strain 23-1]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=735247 OEJ84_RS13385 WP_003226345.1 2552246..2552581(+) (sinR) [Bacillus subtilis strain 23-1]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |