Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   OEJ84_RS13420 Genome accession   NZ_CP106791
Coordinates   2556105..2556488 (-) Length   127 a.a.
NCBI ID   WP_003230168.1    Uniprot ID   -
Organism   Bacillus subtilis strain 23-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2551105..2561488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OEJ84_RS13380 (OEJ84_13380) sinI 2552039..2552212 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  OEJ84_RS13385 (OEJ84_13385) sinR 2552246..2552581 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  OEJ84_RS13390 (OEJ84_13390) tasA 2552674..2553459 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  OEJ84_RS13395 (OEJ84_13395) sipW 2553523..2554095 (-) 573 WP_003246088.1 signal peptidase I SipW -
  OEJ84_RS13400 (OEJ84_13400) tapA 2554079..2554840 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  OEJ84_RS13405 (OEJ84_13405) yqzG 2555112..2555438 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  OEJ84_RS13410 (OEJ84_13410) spoIITA 2555480..2555659 (-) 180 WP_003230176.1 YqzE family protein -
  OEJ84_RS13415 (OEJ84_13415) comGG 2555730..2556104 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  OEJ84_RS13420 (OEJ84_13420) comGF 2556105..2556488 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  OEJ84_RS13425 (OEJ84_13425) comGE 2556514..2556861 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  OEJ84_RS13430 (OEJ84_13430) comGD 2556845..2557276 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  OEJ84_RS13435 (OEJ84_13435) comGC 2557266..2557562 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  OEJ84_RS13440 (OEJ84_13440) comGB 2557576..2558613 (-) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  OEJ84_RS13445 (OEJ84_13445) comGA 2558600..2559670 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  OEJ84_RS13450 (OEJ84_13450) corA 2560082..2561035 (-) 954 WP_004399136.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14281.37 Da        Isoelectric Point: 5.8929

>NTDB_id=735249 OEJ84_RS13420 WP_003230168.1 2556105..2556488(-) (comGF) [Bacillus subtilis strain 23-1]
MLISGSLAAIIHLFLSRQQEHDGFTQQEWMISIEQMMNECKESQAVKTAEHGSVLICTNLSGQDIRFDIYHSMIRKRVDG
KGHVPILDHITAMKADIENGVVLLKIESEDQKVYQTAFPVYSYLGGG

Nucleotide


Download         Length: 384 bp        

>NTDB_id=735249 OEJ84_RS13420 WP_003230168.1 2556105..2556488(-) (comGF) [Bacillus subtilis strain 23-1]
TTGCTCATATCAGGATCGTTAGCTGCGATTATCCATCTGTTTTTGTCTCGACAGCAGGAACATGACGGTTTCACACAGCA
GGAATGGATGATTTCGATAGAACAGATGATGAATGAATGCAAGGAATCACAGGCAGTTAAGACAGCCGAGCATGGGAGCG
TGTTAATCTGCACCAATCTTTCCGGACAAGACATCCGTTTTGACATTTATCATTCAATGATAAGAAAAAGAGTGGATGGC
AAAGGGCATGTTCCGATTTTAGATCATATTACTGCCATGAAAGCTGATATTGAAAATGGTGTTGTTTTGCTGAAAATTGA
GAGTGAAGACCAAAAAGTGTATCAAACTGCTTTTCCAGTCTATTCGTATTTAGGAGGGGGGTGA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(16-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Bacillus subtilis subsp. subtilis str. 168

100

100

1