Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   LLUC7005_RS01710 Genome accession   NZ_CP120933
Coordinates   328826..329422 (+) Length   198 a.a.
NCBI ID   WP_003131648.1    Uniprot ID   Q9CIL6
Organism   Lactococcus lactis subsp. lactis strain UC7005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 323826..334422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC7005_RS01695 (LLUC7005_01690) ahpC 324197..324760 (+) 564 WP_014570377.1 alkyl hydroperoxide reductase subunit C -
  LLUC7005_RS01700 (LLUC7005_01695) ahpF 324827..326356 (+) 1530 WP_010905291.1 alkyl hydroperoxide reductase subunit F -
  LLUC7005_RS01705 (LLUC7005_01700) - 326522..328687 (+) 2166 WP_003131649.1 penicillin-binding transpeptidase domain-containing protein -
  LLUC7005_RS01710 (LLUC7005_01705) recR 328826..329422 (+) 597 WP_003131648.1 recombination mediator RecR Machinery gene
  LLUC7005_RS01715 (LLUC7005_01710) - 329539..330588 (+) 1050 WP_010905293.1 D-alanine--D-alanine ligase -
  LLUC7005_RS01720 (LLUC7005_01715) murF 330663..331985 (+) 1323 WP_010905294.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  LLUC7005_RS01725 (LLUC7005_01720) - 332155..333807 (+) 1653 WP_003131645.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21909.22 Da        Isoelectric Point: 4.8226

>NTDB_id=735245 LLUC7005_RS01710 WP_003131648.1 328826..329422(+) (recR) [Lactococcus lactis subsp. lactis strain UC7005]
MYYPEPIARLIESFSKLPGIGQKTATRLAFYTIGMEDQDVNEFAKNLLSAKRDLSFCSICGNLTESDPCAICTDPTRDRT
TILVVEESKDVLAMEKIREYRGLYHVLHGTISPMNGISPDEINVKTLITRLMDSEVKEVIIATNATSDGEATAMYLARMI
KPAGIKVTRLARGLAVGSDIEYADEITLSKAVENRLEI

Nucleotide


Download         Length: 597 bp        

>NTDB_id=735245 LLUC7005_RS01710 WP_003131648.1 328826..329422(+) (recR) [Lactococcus lactis subsp. lactis strain UC7005]
ATGTATTATCCTGAACCTATTGCTCGCCTGATTGAGTCGTTTTCAAAATTACCAGGGATTGGTCAAAAAACAGCGACTCG
ATTGGCTTTTTATACGATTGGCATGGAAGATCAAGATGTCAATGAATTTGCAAAAAATCTTCTTTCAGCAAAACGGGATT
TGAGTTTTTGCTCGATTTGTGGGAATTTAACAGAAAGTGATCCTTGCGCCATTTGTACCGACCCAACGCGTGATCGAACA
ACTATATTGGTCGTTGAAGAATCTAAAGATGTTCTTGCTATGGAAAAAATTCGGGAATATCGAGGACTTTATCATGTTTT
GCATGGTACGATTAGTCCAATGAATGGGATTTCTCCTGATGAAATTAATGTTAAAACATTGATTACAAGATTAATGGATT
CAGAGGTTAAAGAAGTGATCATCGCAACTAATGCCACTTCTGACGGAGAAGCAACCGCCATGTATCTGGCTCGAATGATT
AAGCCTGCAGGAATTAAAGTGACTCGCTTGGCTCGTGGATTAGCTGTAGGCTCTGATATAGAATACGCAGATGAAATTAC
TTTATCAAAAGCGGTAGAGAATCGGTTGGAAATTTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CIL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

78.283

100

0.783
  recR Bacillus subtilis subsp. subtilis str. 168

59.596

100

0.596
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485