Detailed information NTG0735210

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: LLNCDO1820_RS10500
• Genome accession: NZ_CP120927
• Coordinates: 2054463..2055539 (+)
• Length: 358 a.a.
• NCBI ID: WP_010906242.1
• Uniprot ID: Q9CE70
• Organism: Lactococcus lactis subsp. lactis strain NCDO1820
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2049463..2060539

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LLNCDO1820_RS10475 (LLNCDO1820_10470)	pgsA	2049623..2050195 (-)	573	WP_010906238.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
LLNCDO1820_RS10480 (LLNCDO1820_10475)	-	2050236..2051132 (-)	897	WP_010906239.1	RodZ family helix-turn-helix domain-containing protein	-
LLNCDO1820_RS10485 (LLNCDO1820_10480)	yfmH	2051344..2052627 (-)	1284	WP_004254752.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
LLNCDO1820_RS10490 (LLNCDO1820_10485)	yfmF	2052617..2053903 (-)	1287	WP_021214872.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
LLNCDO1820_RS10495 (LLNCDO1820_10490)	yaaA	2054101..2054463 (+)	363	WP_004254746.1	S4 domain-containing protein YaaA	-
LLNCDO1820_RS10500 (LLNCDO1820_10495)	recF	2054463..2055539 (+)	1077	WP_010906242.1	DNA replication/repair protein RecF	Machinery gene
LLNCDO1820_RS10505 (LLNCDO1820_10500)	-	2055626..2055994 (-)	369	WP_021350160.1	carboxymuconolactone decarboxylase family protein	-
LLNCDO1820_RS10510 (LLNCDO1820_10505)	-	2056072..2056449 (+)	378	WP_021350161.1	MerR family transcriptional regulator	-
LLNCDO1820_RS10515 (LLNCDO1820_10510)	-	2056462..2057406 (-)	945	WP_010906244.1	alpha/beta hydrolase	-
LLNCDO1820_RS10520 (LLNCDO1820_10515)	galE	2057529..2058509 (-)	981	WP_010906245.1	UDP-glucose 4-epimerase GalE	-

Sequence

Protein

• Length: 358 a.a.
• Molecular weight: 41356.23 Da
• Isoelectric Point: 6.8652

>NTDB_id=735210 LLNCDO1820_RS10500 WP_010906242.1 2054463..2055539(+) (recF) [Lactococcus lactis subsp. lactis strain NCDO1820]
MKLKAIELKNFRNYEELKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKELISWSQQEMKVSGVVEKAHAT
VPLEVQLSPKGRIAKANHLKENRLADYIGQLKILMFAPENLELVKGSPATRRKFMDIELGQIHAVYLYDSMRYNRALKER
NAYLKFDKDKIDKNFLSVLDGQLAEHGNKIMLERQNFIDKLEVHAKKIHEQLTHGKENLKIIYNQNVKTDFSKELLSRQD
HDIFRHQTSVGPHRDDLQFFINEINVADFGSQGQQRTVALSIKLAEIDLIFEETGEYPILLLDDVMSELDNHRQLDLIET
SLGKTQTFITTTTLDHLKNLPENLSIFHVNAGTIEQEQ

Nucleotide

• Length: 1077 bp

>NTDB_id=735210 LLNCDO1820_RS10500 WP_010906242.1 2054463..2055539(+) (recF) [Lactococcus lactis subsp. lactis strain NCDO1820]
ATGAAACTCAAAGCAATTGAACTCAAAAATTTTCGTAATTATGAGGAATTAAAACTTGATTTTCACCCTAATCTCAATAT
TTTTTTAGGACAAAATGCTCAAGGGAAAACAAATATTCTTGAGGCGATTCATTTTTTAGCACTCACTCGTAGTCACAGAA
CAAGTCACGACAAAGAGCTCATTTCTTGGTCACAACAAGAAATGAAGGTCTCAGGAGTCGTTGAAAAAGCTCATGCAACT
GTTCCACTTGAAGTTCAATTAAGTCCCAAAGGGAGAATTGCTAAAGCCAATCATCTCAAAGAAAATCGCTTAGCCGACTA
CATTGGTCAACTAAAAATCTTGATGTTTGCACCTGAAAATTTGGAATTAGTCAAAGGTTCTCCAGCTACCCGCAGAAAAT
TTATGGATATTGAACTGGGACAAATCCATGCGGTTTACCTTTATGATTCCATGCGATATAATCGTGCGTTAAAAGAACGG
AATGCTTACTTAAAATTTGATAAAGACAAAATTGATAAAAATTTTTTAAGTGTTCTTGACGGACAATTAGCTGAACATGG
TAATAAAATCATGCTTGAGCGGCAAAATTTTATTGATAAACTTGAAGTTCATGCAAAAAAAATCCATGAGCAACTTACTC
ATGGTAAAGAAAATTTAAAAATCATTTATAATCAAAATGTGAAAACTGACTTTTCAAAAGAATTATTGAGCAGACAAGAC
CATGATATTTTTAGGCATCAAACATCGGTTGGCCCTCATCGTGACGATTTACAATTTTTTATCAATGAGATTAATGTTGC
TGATTTTGGTAGTCAAGGACAACAACGAACCGTTGCTCTCTCAATTAAATTAGCAGAAATTGATTTAATTTTTGAAGAGA
CTGGTGAGTATCCGATTTTACTTTTAGATGATGTCATGAGTGAATTAGACAATCATCGTCAACTTGATTTGATTGAAACA
AGTTTGGGTAAAACACAAACTTTTATAACTACAACTACTCTTGATCATCTTAAAAATTTACCTGAAAATCTGAGTATTTT
CCATGTTAATGCTGGAACCATTGAACAAGAGCAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-353)

3D structure

• AlphaFold DB: Q9CE70

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	55	100	0.553
recF	Bacillus subtilis subsp. subtilis str. 168	45.977	97.207	0.447