Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   LLE38_RS11015 Genome accession   NZ_CP106777
Coordinates   2085340..2085657 (-) Length   105 a.a.
NCBI ID   WP_003697861.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10727     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2080340..2090657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE38_RS10975 (LLE38_10975) - 2081001..2081369 (-) 369 Protein_2116 pilin -
  LLE38_RS10980 (LLE38_10980) - 2081409..2081765 (-) 357 Protein_2117 pilin -
  LLE38_RS10985 (LLE38_10985) - 2081805..2082197 (-) 393 Protein_2118 pilin -
  LLE38_RS10990 (LLE38_10990) pilE 2082756..2083166 (-) 411 WP_229940731.1 pilin Machinery gene
  LLE38_RS10995 (LLE38_10995) lpxC 2083272..2084195 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  LLE38_RS12000 - 2084697..2085416 (-) 720 WP_406946871.1 pilin -
  LLE38_RS11015 (LLE38_11015) pilE 2085340..2085657 (-) 318 WP_003697861.1 pilin Machinery gene
  LLE38_RS11020 (LLE38_11020) - 2086030..2086161 (-) 132 WP_010356054.1 hypothetical protein -
  LLE38_RS11025 (LLE38_11025) - 2086243..2086931 (-) 689 Protein_2124 SprT family zinc-dependent metalloprotease -
  LLE38_RS11030 (LLE38_11030) - 2086928..2087671 (-) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  LLE38_RS11035 (LLE38_11035) gmhB 2087701..2088264 (-) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  LLE38_RS11040 (LLE38_11040) - 2088407..2090059 (+) 1653 WP_003699337.1 LTA synthase family protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11639.16 Da        Isoelectric Point: 10.3830

>NTDB_id=734959 LLE38_RS11015 WP_003697861.1 2085340..2085657(-) (pilE) [Neisseria gonorrhoeae strain 10727]
MASTGVNKEIKGKKLSLWAKRQDGSVKWFCGQPVKRESNNADAVTADGTDGANGTKIETKHLPSTCRDESSAGCIETPRA
DFKHFQKISRYRILPESRQMAGKQR

Nucleotide


Download         Length: 318 bp        

>NTDB_id=734959 LLE38_RS11015 WP_003697861.1 2085340..2085657(-) (pilE) [Neisseria gonorrhoeae strain 10727]
ATGGCTTCAACCGGCGTAAACAAAGAAATCAAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAA
ATGGTTCTGCGGACAGCCGGTTAAGCGCGAAAGCAACAACGCCGACGCCGTCACCGCCGACGGCACCGACGGCGCCAACG
GCACCAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCATCTGCCGGTTGCATAGAAACACCACGCGCC
GATTTCAAACACTTCCAAAAAATCAGCCGTTACCGAATATTACCTGAATCACGGCAAATGGCCGGAAAACAACGGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(2-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

73.611

68.571

0.505
  pilE Neisseria gonorrhoeae MS11

60.563

67.619

0.41