Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   LLE32_RS11080 Genome accession   NZ_CP106775
Coordinates   2100862..2101275 (-) Length   137 a.a.
NCBI ID   WP_229931823.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10702     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2095862..2106275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE32_RS11060 (LLE32_11060) msrAB 2096405..2097973 (-) 1569 WP_003694393.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  LLE32_RS11065 (LLE32_11065) pilA 2098119..2099372 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  LLE32_RS11070 (LLE32_11070) - 2099510..2099668 (+) 159 WP_167550564.1 hypothetical protein -
  LLE32_RS11075 (LLE32_11075) - 2099642..2100349 (-) 708 WP_229931822.1 opacity family porin -
  LLE32_RS11080 (LLE32_11080) pilE 2100862..2101275 (-) 414 WP_229931823.1 pilin Machinery gene
  LLE32_RS11085 (LLE32_11085) lpxC 2101381..2102304 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  LLE32_RS11095 (LLE32_11095) - 2102806..2103174 (-) 369 Protein_2135 pilin -
  LLE32_RS11100 (LLE32_11100) - 2103215..2103553 (-) 339 Protein_2136 pilin -
  LLE32_RS11105 (LLE32_11105) - 2103594..2103809 (-) 216 Protein_2137 pilin -
  LLE32_RS11110 (LLE32_11110) - 2104182..2104313 (-) 132 WP_010356054.1 hypothetical protein -
  LLE32_RS11115 (LLE32_11115) - 2104395..2105083 (-) 689 Protein_2139 SprT family zinc-dependent metalloprotease -
  LLE32_RS11120 (LLE32_11120) - 2105080..2105823 (-) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15027.91 Da        Isoelectric Point: 7.8475

>NTDB_id=734907 LLE32_RS11080 WP_229931823.1 2100862..2101275(-) (pilE) [Neisseria gonorrhoeae strain 10702]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNHGEWPEDNDKAGVASPDKIIGKYVQKVEVNNGVVTAQMKPSGVNKEIQ
GKKLSLWAKRQDGSVKWFCGQPVKRAVKADDVTADTGKDKIETKHLPSTCRDPFSAS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=734907 LLE32_RS11080 WP_229931823.1 2100862..2101275(-) (pilE) [Neisseria gonorrhoeae strain 10702]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATCACGGCGAATGGCCGGAAGACAACGACAAGGCCGGCGTGGCATCCCCCGACAAAATCATAGGCA
AATATGTTCAGAAAGTTGAAGTCAACAACGGCGTCGTTACCGCCCAAATGAAACCAAGCGGCGTAAACAAAGAAATCCAA
GGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCGCCGT
CAAAGCCGACGACGTCACCGCCGACACCGGCAAAGACAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGACCCGT
TCTCTGCTAGCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

70.29

100

0.708
  pilE Neisseria gonorrhoeae MS11

67.391

100

0.679