Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LLE28_RS11880 Genome accession   NZ_CP106771
Coordinates   1956883..1957011 (-) Length   42 a.a.
NCBI ID   WP_263071070.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10531     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1951883..1962011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE28_RS10230 - 1952738..1953022 (-) 285 WP_003692093.1 GIY-YIG nuclease family protein -
  LLE28_RS10235 pilC 1953929..1956505 (-) 2577 WP_317629672.1 PilC family type IV pilus tip adhesin Machinery gene
  LLE28_RS11880 pilC 1956883..1957011 (-) 129 WP_263071070.1 hypothetical protein Machinery gene
  LLE28_RS10240 - 1957698..1957961 (+) 264 WP_229433460.1 hypothetical protein -
  LLE28_RS10245 gnd 1958041..1959489 (+) 1449 WP_003688061.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -
  LLE28_RS10250 waaA 1959552..1960823 (+) 1272 WP_010360974.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  LLE28_RS10255 - 1960864..1961313 (+) 450 WP_229930593.1 CopD family copper resistance protein -

Sequence

Protein


Download         Length: 42 a.a.        Molecular weight: 4883.82 Da        Isoelectric Point: 12.9831

>NTDB_id=734811 LLE28_RS11880 WP_263071070.1 1956883..1957011(-) (pilC) [Neisseria gonorrhoeae strain 10531]
MNKTLKRQVFRHTALYAAILMFSHTGGRGGGRRRRKRINTLL

Nucleotide


Download         Length: 129 bp        

>NTDB_id=734811 LLE28_RS11880 WP_263071070.1 1956883..1957011(-) (pilC) [Neisseria gonorrhoeae strain 10531]
ATGAATAAAACTTTGAAACGGCAGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GCGGGGGGGGGGCAGGCGCAGGCGCAAACGTATAAATACGCTATTGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

80.556

85.714

0.69