Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   P4B34_RS24470 Genome accession   NZ_CP120859
Coordinates   5105960..5106289 (-) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain NY4383     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5100960..5111289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4B34_RS24455 (P4B34_24475) uvrB 5102347..5104359 (-) 2013 WP_003091426.1 excinuclease ABC subunit UvrB Machinery gene
  P4B34_RS24460 (P4B34_24480) - 5104547..5105743 (+) 1197 WP_003091428.1 amino acid aminotransferase -
  P4B34_RS24470 (P4B34_24490) comEA/comE1 5105960..5106289 (-) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  P4B34_RS24475 (P4B34_24495) - 5106480..5108477 (-) 1998 WP_021265047.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  P4B34_RS24480 (P4B34_24500) - 5108490..5109515 (-) 1026 WP_023093916.1 glycosyltransferase family 4 protein -
  P4B34_RS24485 (P4B34_24505) - 5109616..5110560 (-) 945 WP_015502635.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=734811 P4B34_RS24470 WP_003091430.1 5105960..5106289(-) (comEA/comE1) [Pseudomonas aeruginosa strain NY4383]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=734811 P4B34_RS24470 WP_003091430.1 5105960..5106289(-) (comEA/comE1) [Pseudomonas aeruginosa strain NY4383]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385