Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   LLE34_RS10190 Genome accession   NZ_CP106769
Coordinates   1931158..1931553 (-) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10524     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1926158..1936553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE34_RS10170 (LLE34_10170) rfbC 1926235..1926792 (+) 558 WP_003690171.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  LLE34_RS10175 (LLE34_10175) - 1926836..1928854 (-) 2019 WP_003690172.1 OPT family oligopeptide transporter -
  LLE34_RS10180 (LLE34_10180) dnaJ 1929049..1930170 (-) 1122 WP_003690173.1 molecular chaperone DnaJ -
  LLE34_RS10185 (LLE34_10185) - 1930304..1930633 (+) 330 Protein_1962 transposase -
  LLE34_RS10190 (LLE34_10190) comE 1931158..1931553 (-) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  LLE34_RS10195 (LLE34_10195) - 1931658..1931774 (-) 117 Protein_1964 competence protein ComE -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=734749 LLE34_RS10190 WP_003703428.1 1931158..1931553(-) (comE) [Neisseria gonorrhoeae strain 10524]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=734749 LLE34_RS10190 WP_003703428.1 1931158..1931553(-) (comE) [Neisseria gonorrhoeae strain 10524]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1